Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_K15
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    27   2.8  
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    26   8.5  

>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
 Frame = +2

Query: 473 SKRPGTVKRPRCWRF--SIGS--APLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSLRS 640
           S+ P T+ RP  +R   S+G+  +PL S +++D      E+  D  +T      +P+   
Sbjct: 316 SRTPNTLNRPSNYRSHSSMGTRRSPLNSPSQLDPISNENESDTDDSNTGLRNRTSPTAAP 375

Query: 641 PVPTLPLTGYLS 676
           P P+   TG L+
Sbjct: 376 PPPSRRKTGGLN 387


>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +3

Query: 657 RLPDTCPPFSPSGSVALSHSSRL*VSQFXCRSVRXQAGXVXHEXP 791
           ++PDT  P+   GSV LS+   L      C  V      V HE P
Sbjct: 449 KIPDTVLPYKFPGSVYLSYYGVLINFLALCALVYISIFPVTHEKP 493


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,087,616
Number of Sequences: 5004
Number of extensions: 58543
Number of successful extensions: 145
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)