Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_K15
         (912 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1008 - 7987936-7988628,7988923-7989102                           33   0.42 
01_06_0826 - 32252546-32253208                                         29   5.1  
10_08_0223 - 15986763-15987575                                         29   6.8  
12_02_0496 + 19704429-19704613,19705874-19706736,19706764-197069...    28   9.0  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   9.0  
01_07_0118 + 41176159-41178909                                         28   9.0  

>01_01_1008 - 7987936-7988628,7988923-7989102
          Length = 290

 Score = 32.7 bits (71), Expect = 0.42
 Identities = 12/26 (46%), Positives = 20/26 (76%)
 Frame = -3

Query: 679 GGQVSGKRQGRNRRAQRGSFQGETPG 602
           GG+V+G+   R+RR +RG+++GE  G
Sbjct: 249 GGEVNGEEAARSRRRRRGAWEGEEEG 274


>01_06_0826 - 32252546-32253208
          Length = 220

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 19/50 (38%), Positives = 23/50 (46%)
 Frame = +3

Query: 570 EVAKPDRTIKIPGVSPWKLPRCALLFRPCRLPDTCPPFSPSGSVALSHSS 719
           EV+KP R +   G     LP   L    C+     PP SP+G  A S SS
Sbjct: 5   EVSKPSRRLSPKGSFKLSLPSL-LACGQCKATAVSPPESPTGVGARSFSS 53


>10_08_0223 - 15986763-15987575
          Length = 270

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 27/81 (33%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
 Frame = -3

Query: 691 EGEKGGQVSGKRQGRNRRAQRGSFQGE-TPGIFIVLSGFATS--DLSVDFCDARQGGGA- 524
           EG  GG   G   G    A  G  QG    G  I ++   +S  D +  + DA  GGG  
Sbjct: 138 EGGGGGGGGGSNGGSGYGAGAGVGQGAGESGSSIAMAPSPSSGGDYNGGYADAAGGGGGG 197

Query: 523 ---YGKTPATRPFYGSWPFAG 470
              +G  PA  P YG    AG
Sbjct: 198 GGGHGGGPAASPSYGVGAGAG 218


>12_02_0496 +
           19704429-19704613,19705874-19706736,19706764-19706951,
           19707190-19708200
          Length = 748

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 144 FHCILVVVCPNSSMYLIMSGSKLTLXKGRSAAAKS*GIPYSEIV 13
           FH  L  V PNS++   MS   L    GR  + K  G+P + +V
Sbjct: 260 FHLFLSKVFPNSNLNQAMSYPPLMEDLGRQLSKKCGGLPLALVV 303


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 286 NESAN---ARGEAVCVLGALPLPRSLTRCAR 369
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>01_07_0118 + 41176159-41178909
          Length = 916

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = +1

Query: 601 YQAFPPGSSLVAL--SCSDPAAYRIPVRLSPLRE--AWRFLIAHACRYLSSG 744
           Y+    G+SL+ L   C+DP+  RI  R  P+R+  +W  +I+   R  S G
Sbjct: 400 YEECSVGNSLLDLYMKCNDPSTARILFRTMPMRDLISWNTMISGYSRNDSLG 451


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,957,353
Number of Sequences: 37544
Number of extensions: 466121
Number of successful extensions: 1508
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1507
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)