Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_K15
         (912 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    26   0.55 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          25   0.72 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      25   0.72 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   5.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   5.1  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   5.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   5.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   8.9  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.8 bits (54), Expect = 0.55
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 462 SHVLSCVIPLILWITVLPPLSELIPLAA 379
           S +LS V+ L+L   +LPP S ++PL A
Sbjct: 270 SILLSLVVFLLLVSKILPPTSLVLPLIA 297


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 25.4 bits (53), Expect = 0.72
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 598 RYQAFPPGSSLVALSCSDPAAYRIPVRL 681
           +YQ  P    + + S  DPA YRI  R+
Sbjct: 398 KYQIVPSALEIFSTSMKDPAFYRIYKRI 425


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 25.4 bits (53), Expect = 0.72
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 598 RYQAFPPGSSLVALSCSDPAAYRIPVRL 681
           +YQ  P    + + S  DPA YRI  R+
Sbjct: 398 KYQIVPSALEIFSTSMKDPAFYRIYKRI 425


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 483 GLLLAFCSHVL-SCVIPLILWITVLPPLSELIPL 385
           G  ++ CS +L S  +  +L   ++PP S  IPL
Sbjct: 278 GEKVSLCSSILLSLTVFFLLLAEIIPPTSLAIPL 311


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 623 APSLRSPVPTLPLTG 667
           AP    P+P+LPL G
Sbjct: 468 APCFEEPLPSLPLPG 482


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
 Frame = +2

Query: 455 TCEQKASKRPGTVKRPR--CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAP 628
           T      +R   V +PR   WR +I S           ++  G + +D+K TR       
Sbjct: 382 TAPNAEERRVQGVTKPRYMVWRETISSTATLGFRVEGIKLAHGGSSKDFKTTRTREQVTE 441

Query: 629 SLRSPVPTLP 658
           +LR  V   P
Sbjct: 442 ALRRFVEGYP 451


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
 Frame = +2

Query: 455 TCEQKASKRPGTVKRPR--CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAP 628
           T      +R   V +PR   WR +I S           ++  G + +D+K TR       
Sbjct: 297 TAPNAEERRVQGVTKPRYMVWRETISSTATLGFRVEGIKLAHGGSSKDFKTTRTREQVTE 356

Query: 629 SLRSPVPTLP 658
           +LR  V   P
Sbjct: 357 ALRRFVEGYP 366


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
 Frame = +2

Query: 455 TCEQKASKRPGTVKRPR--CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAP 628
           T      +R   V +PR   WR +I S           ++  G + +D+K TR       
Sbjct: 616 TAPNAEERRVQGVTKPRYMVWRETISSTATLGFRVEGIKLAHGGSSKDFKTTRTREQVTE 675

Query: 629 SLRSPVPTLP 658
           +LR  V   P
Sbjct: 676 ALRRFVEGYP 685


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 462 SHVLSCVIPLILWITVLPPLSELIPL 385
           S +LS  +  +L   ++PP S ++PL
Sbjct: 277 SILLSLTVFFLLLAEIIPPTSLVVPL 302


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,311
Number of Sequences: 438
Number of extensions: 4939
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)