Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_K14
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated |Schizosaccharom...    27   2.6  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    26   6.0  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    26   8.0  

>SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +2

Query: 689 GFLGR*VVETQHCNETYKHFKNNIEFTYKLLWQLPNTIPISKLPSVHXXSST 844
           GF+   + ET+H +E     +++I FT + + +    I    LPSV   SS+
Sbjct: 99  GFISSPLNETEHLSEENLKIESSITFTSEEIEKEKENIKSVLLPSVQSISSS 150


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = -3

Query: 143 TTYSESPNSDNLYSRILKRHSCEVHLNKXXQN 48
           T +SES +S  L S  L   SCE HLN   QN
Sbjct: 815 TPFSESTSSYPLVSGNLS--SCETHLNGSPQN 844


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1183

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 739  VSLITMLCFYDLAPQKTEEGRSNFLRK 659
            +SL++ +C YD A  K +  + N+LR+
Sbjct: 971  LSLLSAVCAYDYASDKRKFCKENYLRE 997


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,735,014
Number of Sequences: 5004
Number of extensions: 51389
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)