Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_K14
         (868 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AL021448-1|CAA16276.2|  898|Caenorhabditis elegans Hypothetical ...    29   4.3  
AF233290-1|AAF62516.1|  898|Caenorhabditis elegans maternal-effe...    29   4.3  
U97005-8|AAB52286.2|  154|Caenorhabditis elegans Hypothetical pr...    28   9.9  

>Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical protein
            C08B11.3 protein.
          Length = 1244

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
 Frame = +3

Query: 534  TSP--AAGTSPGSRNLPCSRNLPWQPEPLLQT 623
            TSP   AG+SP  R+ P  +++P QP PL+QT
Sbjct: 1205 TSPQFTAGSSP-HRHQPIQQHIPSQPSPLVQT 1235


>Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical
           protein T21B6.3 protein.
          Length = 821

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
 Frame = +3

Query: 261 KCTHGCGLRNNETCIRIKGCI-RHCHRFYCRTFPASCRNSGSWNLTCSWNLTCSWNLTCS 437
           +C  G  +R   TC+   G     CH          C NS S    C+WN  C W+  CS
Sbjct: 719 ECGGGQSIRTR-TCLNSAGSPDSSCHCDGPDREEKEC-NSQSCAPQCAWNTWCEWS-PCS 775

Query: 438 WNLTC 452
             L C
Sbjct: 776 TQLAC 780


>AL021448-1|CAA16276.2|  898|Caenorhabditis elegans Hypothetical
           protein Y2H9A.1 protein.
          Length = 898

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = +3

Query: 339 FYCRT-FPASCR---NSGSWNLTCSWNLTCSWNLTCSWNLTCSCNL 464
           F CR+ F ASC    NSG ++   +  L C   L C  +   SCNL
Sbjct: 168 FPCRSKFHASCMINYNSGGFHFQYAARLECQARLLCPLHCCNSCNL 213


>AF233290-1|AAF62516.1|  898|Caenorhabditis elegans maternal-effect
           sterile 4 protein.
          Length = 898

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = +3

Query: 339 FYCRT-FPASCR---NSGSWNLTCSWNLTCSWNLTCSWNLTCSCNL 464
           F CR+ F ASC    NSG ++   +  L C   L C  +   SCNL
Sbjct: 168 FPCRSKFHASCMINYNSGGFHFQYAARLECQARLLCPLHCCNSCNL 213


>U97005-8|AAB52286.2|  154|Caenorhabditis elegans Hypothetical
           protein F19F10.8 protein.
          Length = 154

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
 Frame = +3

Query: 264 CTHGCGLRNNETCIRIKGC--IRHCHRFY----CRTFPASCRNSGSWNLTC 398
           C   CG  N+ETC+ IK      HCH+      C+    + +N+G  N+ C
Sbjct: 63  CVASCG--NSETCVAIKYKRECNHCHKAVLIPDCKGMKMAYKNTGE-NILC 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,353,507
Number of Sequences: 27780
Number of extensions: 306558
Number of successful extensions: 778
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)