Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_K14
         (868 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   2.8  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   2.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   8.4  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +2

Query: 647 AIADFAKKVGTTFFGFLGR*VVETQHCNETYKHFKNNIEFTYK 775
           ++A+   + G  FFG L    +   +    +++  NNIE   K
Sbjct: 309 SVAEVMDRNGVLFFGLLSDLAIGCWNSEHFFEYGGNNIEIIVK 351


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/32 (25%), Positives = 17/32 (53%)
 Frame = +2

Query: 713 ETQHCNETYKHFKNNIEFTYKLLWQLPNTIPI 808
           +T H N  YK++   + +    + Q+P  +P+
Sbjct: 321 KTIHNNNNYKNYNKKLYYNIINIEQIPVPVPV 352


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 600 QPEPLLQTHQY*TLLAPSQILRRKLE 677
           QPEPL++  ++   L P+ IL   L+
Sbjct: 491 QPEPLIELIEHWMPLLPNWILENILD 516


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,688
Number of Sequences: 438
Number of extensions: 3781
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)