Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_K13
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    28   2.0  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    27   3.5  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   4.6  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    26   8.0  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    26   8.0  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    26   8.0  

>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +3

Query: 279 TVNQKNMCLNVILSP-DFPNEKPSIFVNPPXTPSVGRRKLKPNRRSSGTLEFHDTLGPGP 455
           T N ++M   +  S  +  +  PS+ VN P TP+ G      N+ S+ T EF  T    P
Sbjct: 715 TYNSRHMAYEMTKSHINVISPGPSLQVNAPYTPTSGE---LGNKVSNPTKEFVSTSSYAP 771

Query: 456 RGTSHNT*IPE 488
              + N  I E
Sbjct: 772 AANTRNAIIRE 782


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 452 PRSECIVKFKSPGAPTIWFEFSATHGWSXRWIDKYRRLLVRKIW 321
           P S  ++ F S G P++W E       +  W + +RR+L+R I+
Sbjct: 358 PPSNGLMVFTS-GIPSVWAEIDHQ---AMAWCENFRRVLIRGIF 397


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +3

Query: 318 SPDFPNEKPSI--FVNPPXTPSVGRRKLKPNR-RSSGTLEFHD 437
           SP FPN  PSI     PP  PS    + +PNR    G   F D
Sbjct: 235 SPKFPNRGPSIPSASVPPVPPSSYVLQQRPNRVDDHGRFHFKD 277


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 19/77 (24%), Positives = 34/77 (44%)
 Frame = +3

Query: 198 KRQIDTLKVFNENVVEIKESSEYRIDFTVNQKNMCLNVILSPDFPNEKPSIFVNPPXTPS 377
           +R   +L V   +VV    S+  R      Q+    ++ L  ++   +P + +    +P+
Sbjct: 717 ERSASSLSVRQSDVVSPAPSTRARGQSVSGQQRPSSSMSLYGEYNKSQPQLSMQRSVSPN 776

Query: 378 VGRRKLKPNRRSSGTLE 428
                L PNRRSS  L+
Sbjct: 777 ----PLGPNRRSSSVLQ 789


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -3

Query: 650 RSLSCKSVFSNISLNSSMVKLLSSGNSID*ALTVDRGLASL 528
           R+L C S  S ++  S +V L S+   I   LT+D GL  L
Sbjct: 26  RALDCDSEMSLMNSLSHLVYLTSTSPKIREILTMDGGLMRL 66


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 574 FPELNNFTIEELREILENTD 633
           F EL+NF  EEL++  +NTD
Sbjct: 374 FDELDNFAEEELQKQRQNTD 393


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,179,524
Number of Sequences: 5004
Number of extensions: 63435
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)