Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_K13
         (871 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0519 + 6831912-6831978,6832333-6832488,6832748-6833098,683...    29   4.8  

>04_01_0519 +
           6831912-6831978,6832333-6832488,6832748-6833098,
           6833481-6833662,6833756-6834004,6834182-6834406,
           6837492-6837791,6838642-6839215,6839959-6840059
          Length = 734

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -3

Query: 545 RGLASLDLELTSTVMFKTDFWNSRIMACTTRPRSECIVKFKSPGAPTI 402
           RG+A   ++  +T +F  D WN     CT+ P    +  +K+    T+
Sbjct: 608 RGIAKCTIQSGATALFWNDLWNDD-FKCTSYPNLFSVTLYKNDSVRTM 654


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,394,563
Number of Sequences: 37544
Number of extensions: 375713
Number of successful extensions: 846
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)