Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_K13
         (871 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC067754-1|AAH67754.1|  397|Homo sapiens vacuolar protein sortin...    58   3e-08
AY033079-1|AAK54349.1|  397|Homo sapiens hepatocellular carcinom...    58   3e-08
AL834189-1|CAD38883.1|  185|Homo sapiens hypothetical protein pr...    58   3e-08
AK057204-1|BAB71381.1|  397|Homo sapiens protein ( Homo sapiens ...    58   3e-08
AF547097-1|AAQ12067.1|  372|Homo sapiens hcrp1 beta protein.           39   0.027

>BC067754-1|AAH67754.1|  397|Homo sapiens vacuolar protein sorting
           37 homolog A (S. cerevisiae) protein.
          Length = 397

 Score = 58.4 bits (135), Expect = 3e-08
 Identities = 24/60 (40%), Positives = 40/60 (66%)
 Frame = +3

Query: 186 QDARKRQIDTLKVFNENVVEIKESSEYRIDFTVNQKNMCLNVILSPDFPNEKPSIFVNPP 365
           Q  ++R I++L+  + ++ EI++  EYR+ FT+N   + +N++L P FP EKP I V PP
Sbjct: 26  QQQKQRLIESLRNSHSSIAEIQKDVEYRLPFTINNLTININILLPPQFPQEKPVISVYPP 85



 Score = 38.7 bits (86), Expect = 0.027
 Identities = 15/47 (31%), Positives = 31/47 (65%)
 Frame = +1

Query: 352 LSIHRXLHPWVAENSNQIVGAPGLLNFTIHSDLGRVVQAIIREFQKS 492
           +S++  +   + +     V +P + NFT+HSDLG+++Q+++ EF K+
Sbjct: 80  ISVYPPIRHHLMDKQGVYVTSPLVNNFTMHSDLGKIIQSLLDEFWKN 126


>AY033079-1|AAK54349.1|  397|Homo sapiens hepatocellular carcinoma
           related protein 1 protein.
          Length = 397

 Score = 58.4 bits (135), Expect = 3e-08
 Identities = 24/60 (40%), Positives = 40/60 (66%)
 Frame = +3

Query: 186 QDARKRQIDTLKVFNENVVEIKESSEYRIDFTVNQKNMCLNVILSPDFPNEKPSIFVNPP 365
           Q  ++R I++L+  + ++ EI++  EYR+ FT+N   + +N++L P FP EKP I V PP
Sbjct: 26  QQQKQRLIESLRNSHSSIAEIQKDVEYRLPFTINNLTININILLPPQFPQEKPVISVYPP 85



 Score = 38.7 bits (86), Expect = 0.027
 Identities = 15/47 (31%), Positives = 31/47 (65%)
 Frame = +1

Query: 352 LSIHRXLHPWVAENSNQIVGAPGLLNFTIHSDLGRVVQAIIREFQKS 492
           +S++  +   + +     V +P + NFT+HSDLG+++Q+++ EF K+
Sbjct: 80  ISVYPPIRHHLMDKQGVYVTSPLVNNFTMHSDLGKIIQSLLDEFWKN 126


>AL834189-1|CAD38883.1|  185|Homo sapiens hypothetical protein
           protein.
          Length = 185

 Score = 58.4 bits (135), Expect = 3e-08
 Identities = 24/60 (40%), Positives = 40/60 (66%)
 Frame = +3

Query: 186 QDARKRQIDTLKVFNENVVEIKESSEYRIDFTVNQKNMCLNVILSPDFPNEKPSIFVNPP 365
           Q  ++R I++L+  + ++ EI++  EYR+ FT+N   + +N++L P FP EKP I V PP
Sbjct: 26  QQQKQRLIESLRNSHSSIAEIQKDVEYRLPFTINNLTININILLPPQFPQEKPVISVYPP 85



 Score = 38.7 bits (86), Expect = 0.027
 Identities = 15/47 (31%), Positives = 31/47 (65%)
 Frame = +1

Query: 352 LSIHRXLHPWVAENSNQIVGAPGLLNFTIHSDLGRVVQAIIREFQKS 492
           +S++  +   + +     V +P + NFT+HSDLG+++Q+++ EF K+
Sbjct: 80  ISVYPPIRHHLMDKQGVYVTSPLVNNFTMHSDLGKIIQSLLDEFWKN 126


>AK057204-1|BAB71381.1|  397|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32642 fis, clone SYNOV2001144. ).
          Length = 397

 Score = 58.4 bits (135), Expect = 3e-08
 Identities = 24/60 (40%), Positives = 40/60 (66%)
 Frame = +3

Query: 186 QDARKRQIDTLKVFNENVVEIKESSEYRIDFTVNQKNMCLNVILSPDFPNEKPSIFVNPP 365
           Q  ++R I++L+  + ++ EI++  EYR+ FT+N   + +N++L P FP EKP I V PP
Sbjct: 26  QQQKQRLIESLRNSHSSIAEIQKDVEYRLPFTINNLTININILLPPQFPQEKPVISVYPP 85



 Score = 38.7 bits (86), Expect = 0.027
 Identities = 15/47 (31%), Positives = 31/47 (65%)
 Frame = +1

Query: 352 LSIHRXLHPWVAENSNQIVGAPGLLNFTIHSDLGRVVQAIIREFQKS 492
           +S++  +   + +     V +P + NFT+HSDLG+++Q+++ EF K+
Sbjct: 80  ISVYPPIRHHLMDKQGVYVTSPLVNNFTMHSDLGKIIQSLLDEFWKN 126


>AF547097-1|AAQ12067.1|  372|Homo sapiens hcrp1 beta protein.
          Length = 372

 Score = 38.7 bits (86), Expect = 0.027
 Identities = 15/47 (31%), Positives = 31/47 (65%)
 Frame = +1

Query: 352 LSIHRXLHPWVAENSNQIVGAPGLLNFTIHSDLGRVVQAIIREFQKS 492
           +S++  +   + +     V +P + NFT+HSDLG+++Q+++ EF K+
Sbjct: 55  ISVYPPIRHHLMDKQGVYVTSPLVNNFTMHSDLGKIIQSLLDEFWKN 101


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,559,282
Number of Sequences: 237096
Number of extensions: 2157347
Number of successful extensions: 4459
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4459
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11048563978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)