Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_K13
         (871 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            24   2.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   2.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   3.7  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   6.4  

>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +3

Query: 165 QWPYYNDQDARKRQIDTLKVFNENVVEIKESSEYRID 275
           +WP  ND    K +ID     +    E +  ++Y +D
Sbjct: 73  EWPVGNDTLKSKMEIDPATQKDAGYYECQADNQYAVD 109


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +1

Query: 46  EPENFLSFSCNLINKHLSSHCVGFITVLPLKFKRQQRKCYSGRITT 183
           + +  L  + +L ++ LS+  V FI   P    +   KC++  +TT
Sbjct: 673 DDDTLLEVALSLGSEALSAATVRFIEAEPQPIGKALSKCHNRNVTT 718


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = -3

Query: 68  NDKKFSGSQILRIPYSXI 15
           N  +F+G +++R+PY+ +
Sbjct: 70  NASEFAGIRVIRVPYNRV 87


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 331 LTRSLLYLSIHRXLHPWVAENSNQIVGAPGLLN 429
           L+  L Y+   +  +P   EN+ Q  G+  +LN
Sbjct: 274 LSHGLYYVDTEQFSNPQYEENNVQYEGSQDILN 306


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,680
Number of Sequences: 438
Number of extensions: 4387
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)