Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_K12
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    28   1.5  
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce...    26   6.0  
SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma...    26   6.0  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    26   6.0  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   8.0  

>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 471 TSDNKSEWCLRSAVQPAVRANSAGDYNGGQAGGNSALPLRDSHHRPSA 614
           T+ +K+E    S  +P     S G+ + G   GN +LPL +  H+P +
Sbjct: 109 TAPSKTEPSTPSTEKPEPSTPS-GESDHGSNAGNESLPLLEEDHKPES 155


>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -2

Query: 444 SWLRKIKKRLENSWKQISTKKT-ERNTKTLKFIKVVNGLLITPGIESFRTHLHNLAVPAR 268
           SW+     R  + W Q+S K+T E+NTK         GL+ T   E  +T  +N    A 
Sbjct: 188 SWIEMKPGRDGDRWSQVSYKRTLEQNTKL--------GLVDTDQPEDVKTQTNN----AS 235

Query: 267 GALRSDVAAI 238
             L+ D  A+
Sbjct: 236 NTLKHDATAV 245


>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 25/87 (28%), Positives = 38/87 (43%)
 Frame = +1

Query: 520 LSELIQPVTTMAAKQEETLLSRCEIPIIDLAHIGTDVCPMKSVVRRIGQQLFTALSTKGL 699
           LS+LI+  T    +      +R  +P+ID    G  V        RI QQL  A  + G 
Sbjct: 2   LSQLIERSTQYVREASLEEQNRI-MPLIDF---GPYVNQEPGAHERIIQQLRAACESTGF 57

Query: 700 AVLVNHGIADEKLKSVYGDLDNFCALP 780
             +VN  I+ + +K+ +     F  LP
Sbjct: 58  FQIVNSPISPDVVKNAFRASKQFFELP 84


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 646 VVRRIGQQLFTALSTKGLAVLVNH 717
           + +R GQ LFTA + KG+  ++ H
Sbjct: 131 LTKREGQPLFTACTPKGIMCILKH 154


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 250  VRSESASSRNCKVMQMSSERFYTRGNQK 333
            V+ ++A SRNC + +   +  Y   NQK
Sbjct: 1392 VQLDNALSRNCSLFERERQNLYYSDNQK 1419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,356,796
Number of Sequences: 5004
Number of extensions: 66336
Number of successful extensions: 202
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)