Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_K12
(868 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0905 - 21469688-21469933,21470175-21470499,21470586-214708... 35 0.073
10_08_0902 - 21449748-21449993,21450136-21450460,21450658-214509... 33 0.30
10_08_0908 - 21476700-21476945,21477638-21477935,21478078-214783... 33 0.39
01_01_0206 - 1770622-1771347 31 1.2
04_04_0909 - 29312875-29313135,29313235-29313556,29313676-293139... 31 1.6
03_02_0257 + 6907997-6908504,6909316-6909348,6910163-6910308 30 2.8
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127... 30 2.8
06_01_0593 + 4279988-4281325 29 3.6
06_01_0263 + 1936927-1936936,1937031-1937305,1937727-1938079,193... 29 3.6
12_01_0049 + 417325-419068,419667-420307 29 4.8
11_01_0047 + 358370-360107,360713-361353 29 4.8
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997... 29 6.4
10_08_0903 - 21459932-21460201,21460660-21460993,21461126-214613... 29 6.4
08_02_0553 - 18561912-18563042 29 6.4
08_02_0547 - 18484761-18485951 29 6.4
04_04_0907 + 29304830-29305030,29305296-29305547 29 6.4
01_04_0068 + 15693131-15693533,15693604-15693803,15693879-156941... 29 6.4
08_02_0549 - 18501764-18502888 28 8.4
01_06_0718 - 31467530-31467892,31468017-31468178,31468268-314684... 28 8.4
>10_08_0905 -
21469688-21469933,21470175-21470499,21470586-21470833,
21471061-21471315
Length = 357
Score = 35.1 bits (77), Expect = 0.073
Identities = 21/63 (33%), Positives = 35/63 (55%)
Frame = +1
Query: 592 IPIIDLAHIGTDVCPMKSVVRRIGQQLFTALSTKGLAVLVNHGIADEKLKSVYGDLDNFC 771
IPIIDL + +CP S + +L +A G +L+NHG+ DE + ++ D+ +F
Sbjct: 53 IPIIDLKKL---LCPQSSEEECV--KLRSACQYWGFFLLINHGVPDEVIANLKRDIVDFF 107
Query: 772 ALP 780
+ P
Sbjct: 108 SQP 110
>10_08_0902 -
21449748-21449993,21450136-21450460,21450658-21450905,
21451091-21451324
Length = 350
Score = 33.1 bits (72), Expect = 0.30
Identities = 23/63 (36%), Positives = 32/63 (50%)
Frame = +1
Query: 592 IPIIDLAHIGTDVCPMKSVVRRIGQQLFTALSTKGLAVLVNHGIADEKLKSVYGDLDNFC 771
IP+IDLA + + P S + +L +A G LVNHG+ D+ + V DL F
Sbjct: 46 IPVIDLAKL---LNPQSS--QEECAKLRSACQHWGFFQLVNHGVPDDVISDVRRDLTEFF 100
Query: 772 ALP 780
LP
Sbjct: 101 KLP 103
>10_08_0908 -
21476700-21476945,21477638-21477935,21478078-21478325,
21479319-21479573
Length = 348
Score = 32.7 bits (71), Expect = 0.39
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = +1
Query: 592 IPIIDLAHIGTDVCPMKSVVRRIGQQLFTALSTKGLAVLVNHGIADEKLKSVYGDLDNFC 771
IPIIDL + + P S + +L +A G L+NHG+ DE + ++ DL F
Sbjct: 53 IPIIDLDKL---ISPQSSQEECV--KLISACQYWGFFQLINHGVPDEVIANLKNDLVEFF 107
Query: 772 ALP 780
+ P
Sbjct: 108 SQP 110
>01_01_0206 - 1770622-1771347
Length = 241
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 516 PAVRANSAGDYNGGQAGGNSALPLRDSHHRPSAHR 620
P +R+ SAG Q GG + HHRP H+
Sbjct: 144 PLMRSRSAGSAAAAQGGGLGGVVSGGGHHRPPQHK 178
>04_04_0909 -
29312875-29313135,29313235-29313556,29313676-29313923,
29314032-29314259
Length = 352
Score = 30.7 bits (66), Expect = 1.6
Identities = 21/64 (32%), Positives = 32/64 (50%)
Frame = +1
Query: 592 IPIIDLAHIGTDVCPMKSVVRRIGQQLFTALSTKGLAVLVNHGIADEKLKSVYGDLDNFC 771
IP+IDL + D + VV IG +A T G ++ NHGI +E ++ + F
Sbjct: 45 IPVIDLKQL--DGPDRRKVVEAIG----SACETDGFFMVKNHGIPEEVVEGMLRVAREFF 98
Query: 772 ALPE 783
+PE
Sbjct: 99 HMPE 102
>03_02_0257 + 6907997-6908504,6909316-6909348,6910163-6910308
Length = 228
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 465 WKTSDNKSEWCLRSAVQPAVRANS 536
W T + +WC R A QPA R +S
Sbjct: 121 WPTRARRRQWCARLAAQPARRGSS 144
>02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,
1279204-1279336,1279425-1279551,1279788-1280284,
1280578-1280642,1280722-1280823,1281020-1281162,
1281761-1281816,1282214-1282869,1282975-1283165,
1283280-1283574,1283738-1283778,1284082-1284104,
1284173-1284369,1284472-1284581,1285309-1285639,
1285968-1286060,1286095-1286166,1286626-1286886
Length = 1788
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -2
Query: 330 LITPGIESFRTHLHNLAVPARGALRSDVAAISYTDLTH*KLVFLGLA 190
L G++ FRT L L + A R + A+ Y L + K F GLA
Sbjct: 983 LFNQGLKDFRTPLEELLSVIQNASRKEGASTCYRMLVYLKYCFQGLA 1029
>06_01_0593 + 4279988-4281325
Length = 445
Score = 29.5 bits (63), Expect = 3.6
Identities = 23/74 (31%), Positives = 35/74 (47%)
Frame = +3
Query: 498 LRSAVQPAVRANSAGDYNGGQAGGNSALPLRDSHHRPSAHRYRCVSYEISGASYRSTTFY 677
LR+ PAVR + A +Y+ + GG S LP + S ++ + +GA R +TF
Sbjct: 197 LRARSPPAVRFDHA-EYSR-RRGGGSKLPFDSAILPMSKNQLNALKGAGAGAGKRLSTFT 254
Query: 678 GAQH*RTRCTCQPR 719
RC C+ R
Sbjct: 255 AVVAHVWRCACKAR 268
>06_01_0263 + 1936927-1936936,1937031-1937305,1937727-1938079,
1938598-1938715,1938823-1938946,1939389-1939608,
1939948-1940017,1940083-1940136,1940536-1940604,
1941138-1941194,1941503-1941575,1942037-1942080,
1942629-1942751,1943092-1943321,1943552-1943660,
1944196-1944339,1944443-1944604,1944921-1945197,
1945326-1945486,1945591-1945782,1946789-1946971,
1946986-1947063,1947187-1947366,1947476-1947562
Length = 1130
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2
Query: 444 SWLRKIKKRLENSWKQISTKKTERNTKTLKFIKV 343
+W K +LE K KKT+RNT F+ +
Sbjct: 1054 NWFASTKAKLEGEAKDRDDKKTDRNTSGASFVSL 1087
>12_01_0049 + 417325-419068,419667-420307
Length = 794
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 68 VHGEPVYSRXTFETRQL*GTGGARRRRFVHAGITFTHGLLAAS 196
+H + ++ETR G AR F+H +T HG L AS
Sbjct: 580 LHARAPNTPISWETRMTIAKGTARGLAFLHDDMTIVHGNLTAS 622
>11_01_0047 + 358370-360107,360713-361353
Length = 792
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 68 VHGEPVYSRXTFETRQL*GTGGARRRRFVHAGITFTHGLLAAS 196
+H + ++ETR G AR F+H +T HG L AS
Sbjct: 578 LHARAPNTPISWETRMTIAKGTARGLAFLHDDMTIVHGNLTAS 620
>10_08_0911 - 21499196-21499236,21499368-21499488,21499665-21499789,
21500187-21500418,21500488-21500668,21501342-21501438,
21501641-21501779,21502024-21502351,21502890-21503137,
21503270-21503543,21504200-21504291,21504451-21504521,
21505091-21505181,21506526-21507380,21507482-21507594,
21508007-21508074,21508655-21508835,21509084-21509186,
21509273-21509379,21510046-21511584,21511661-21511771,
21511856-21511908,21511988-21512063,21512147-21512366,
21512477-21512901,21513193-21513372,21513503-21515474
Length = 2680
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +1
Query: 592 IPIIDLAHIGTDVCPMKSVVRRIGQQLFTALSTKGLAVLVNHGIADEKLKSVYGDLDNFC 771
+P+ID++ + + + + L +A G LVNHG+ E L+ + D+ F
Sbjct: 2145 LPVIDMSRLINPEFSEEEIAK-----LGSACEDWGFFQLVNHGVDGELLQRIKDDITEFF 2199
Query: 772 ALP 780
LP
Sbjct: 2200 RLP 2202
>10_08_0903 -
21459932-21460201,21460660-21460993,21461126-21461373,
21461508-21461762
Length = 368
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/63 (26%), Positives = 33/63 (52%)
Frame = +1
Query: 592 IPIIDLAHIGTDVCPMKSVVRRIGQQLFTALSTKGLAVLVNHGIADEKLKSVYGDLDNFC 771
IP +DL+ + + P+ S ++L +A G L+NHG++++ ++ D+ F
Sbjct: 53 IPTVDLSKL---LDPLSSDEET--EKLGSACQQWGFFQLINHGVSEDVIRDARKDIAEFF 107
Query: 772 ALP 780
LP
Sbjct: 108 RLP 110
>08_02_0553 - 18561912-18563042
Length = 376
Score = 28.7 bits (61), Expect = 6.4
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +1
Query: 592 IPIIDLAHIGTDVCPMKSVVRRIGQQLFTALSTKGLAVLVNHGIADEKLKSVYGDLDNF 768
IP+IDLA D + + VR TA T G +VNHG+A E + + + F
Sbjct: 57 IPLIDLAKADVDRGRVVAEVR-------TAAETVGFFQVVNHGVAGELMDEMLAAVRRF 108
>08_02_0547 - 18484761-18485951
Length = 396
Score = 28.7 bits (61), Expect = 6.4
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = +1
Query: 592 IPIIDLAHIGTDVCPMKSVVRRIGQQLFTALSTKGLAVLVNHGIADEKLKSVYGDLDNFC 771
IP+IDLA D + S VR +A + GL +VNHG+A E + ++ F
Sbjct: 57 IPLIDLAKADVDRGHVVSQVR-------SAAESAGLFQVVNHGVAGELMDAMLAAARRFN 109
Query: 772 ALP 780
P
Sbjct: 110 EQP 112
>04_04_0907 + 29304830-29305030,29305296-29305547
Length = 150
Score = 28.7 bits (61), Expect = 6.4
Identities = 23/63 (36%), Positives = 30/63 (47%)
Frame = +1
Query: 592 IPIIDLAHIGTDVCPMKSVVRRIGQQLFTALSTKGLAVLVNHGIADEKLKSVYGDLDNFC 771
IP+IDLA P K R+ ++ A T G + NHGIA+E L+ V F
Sbjct: 39 IPLIDLAS------PDKP---RVIAEIAQACRTYGFFQVTNHGIAEELLEKVMAVALEFF 89
Query: 772 ALP 780
LP
Sbjct: 90 RLP 92
>01_04_0068 +
15693131-15693533,15693604-15693803,15693879-15694162,
15694251-15694428
Length = 354
Score = 28.7 bits (61), Expect = 6.4
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Frame = -3
Query: 809 YEDIALDSPSGSAQKLSRSP*TDFSFSSAM---PWLTSTASPLV---LSAVKSC*PIRRT 648
YED+ LD P G A +R ++ + A+ PW TS S + SA SC
Sbjct: 32 YEDLELDYPGGDAS--TRHKPRHYTVAQAVHHPPWATSGVSCTISSGSSATSSC------ 83
Query: 647 TDFIGHTSVPMCARSMMGISQRESRVSSC 561
T G ++ C S S VS+C
Sbjct: 84 TISSGSSATSSCTISSSSSGSSTSTVSAC 112
>08_02_0549 - 18501764-18502888
Length = 374
Score = 28.3 bits (60), Expect = 8.4
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +1
Query: 592 IPIIDLAHIGTDVCPMKSVVRRIGQQLFTALSTKGLAVLVNHGIADEKLKSVYGDLDNF 768
IP+IDLA D VV Q+ A T G +VNHG+A E ++++ + F
Sbjct: 57 IPLIDLAKADVD---RDHVV----SQVTAAAETVGFFQVVNHGVAGELMEAMLAAVRRF 108
>01_06_0718 -
31467530-31467892,31468017-31468178,31468268-31468415,
31468536-31468612,31468693-31468763,31468965-31469051,
31469138-31469602,31470357-31470659,31471151-31471202
Length = 575
Score = 28.3 bits (60), Expect = 8.4
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +3
Query: 471 TSDNKSEWCLRSAVQPAVRANSAGDYNGGQAGGNSALPLRDSHHRPSAHRYRCVS 635
TS S + S+ V A++ D N G A SA D H PS + +S
Sbjct: 83 TSPGDSSYTGGSSTSATVTASTDADPNAGDAVPTSAAEFYDPHRPPSQQQSHALS 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,579,217
Number of Sequences: 37544
Number of extensions: 469909
Number of successful extensions: 1379
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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