Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_K12
         (868 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80027-16|AAC48128.2|  399|Caenorhabditis elegans Hypothetical p...    30   2.5  
U50307-4|AAA92305.1|  413|Caenorhabditis elegans Hypothetical pr...    29   5.7  
AF047655-7|AAC04404.1|  561|Caenorhabditis elegans Hypothetical ...    28   7.5  

>U80027-16|AAC48128.2|  399|Caenorhabditis elegans Hypothetical
           protein T28A11.20 protein.
          Length = 399

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/65 (21%), Positives = 35/65 (53%)
 Frame = -1

Query: 502 LKHHSDLLSLVFHSN*QLAIVAPKDKKKVGKQLETDKH*KN*TEHENIKVY*SCEWSFDY 323
           L + S+ L +   +  + + ++ K K  + K +ET K      +H ++KV+ + + +++ 
Sbjct: 65  LHNISETLKIRIRAELESSSISDKAKTHIKKSIETSKQFYAFYDHNDVKVFETAKLTYET 124

Query: 322 PWYRI 308
            +YR+
Sbjct: 125 EYYRL 129


>U50307-4|AAA92305.1|  413|Caenorhabditis elegans Hypothetical
           protein F43H9.3 protein.
          Length = 413

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = -2

Query: 510 PHSSNTTPTCYHSFSTVISN*RSWLRKIKKRLENSWKQISTKKTERNTKTLKFIKVVNGL 331
           P SSN       +   V    + +  K++K  E   +  S +K  +NTK L FIK +N L
Sbjct: 26  PSSSNENVKPISNLPYVDYIKKKYPEKLEKMNEQVAELNSQRKECKNTKVLSFIKDLNSL 85

Query: 330 LI 325
           ++
Sbjct: 86  IL 87


>AF047655-7|AAC04404.1|  561|Caenorhabditis elegans Hypothetical
           protein C17B7.10 protein.
          Length = 561

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/65 (21%), Positives = 35/65 (53%)
 Frame = -1

Query: 502 LKHHSDLLSLVFHSN*QLAIVAPKDKKKVGKQLETDKH*KN*TEHENIKVY*SCEWSFDY 323
           L + S+ L +   +  + + ++ K K  + K +ET K      +H ++KV+ + + +++ 
Sbjct: 227 LHNISETLKIRIIAELESSSISDKAKTHIKKSIETSKQFFAFYDHNDVKVFETAKLTYET 286

Query: 322 PWYRI 308
            +YR+
Sbjct: 287 EYYRL 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,924,303
Number of Sequences: 27780
Number of extensions: 387669
Number of successful extensions: 1017
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)