Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_K12
         (868 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              25   0.90 
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    25   0.90 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   4.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.4  

>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 353 NFNVFVFRSVFLVLICFQLFSN 418
           NF++    S+FL+LI F ++SN
Sbjct: 4   NFSIMFIHSIFLILIIF-IYSN 24


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 353 NFNVFVFRSVFLVLICFQLFSN 418
           NF++    S+FL+LI F ++SN
Sbjct: 4   NFSIMFIHSIFLILIIF-IYSN 24


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 709 VNHGIADEKLKSVYGDLDNFCALPEG 786
           +NH + +E  +S YGD  N C +  G
Sbjct: 449 LNHMMREEFYQSQYGDPINNCEIKAG 474


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 578 SRVSSCLAAIVVTG*ISSDSWLYRTPQTP 492
           S +S+ L+ +VVT  IS+  WL    + P
Sbjct: 56  SGLSAMLSLVVVTVAISTGEWLLTEEKLP 84


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = -2

Query: 516 VVPHSSNTTPTCYHSFSTVISN 451
           ++  + +  P  YH F TV+++
Sbjct: 156 IIERNGDKPPLTYHQFQTVVAS 177


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,449
Number of Sequences: 438
Number of extensions: 4463
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)