Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_K11
         (925 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0194 + 13645418-13645790,13645879-13647653                       29   5.2  
08_01_0722 + 6412654-6412860,6413142-6413687,6413745-6413877,641...    29   6.9  
07_01_0479 + 3606663-3607448                                           28   9.1  
02_05_0686 - 30900748-30902167,30903442-30904742                       28   9.1  
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329...    23   9.6  

>01_03_0194 + 13645418-13645790,13645879-13647653
          Length = 715

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +1

Query: 130 DKYKCLFQGLWMYINICMCIIKILHLFPLSGTCNTSSLRT 249
           DKY  LF GL    N   C++    L P+ G  NTSS+ T
Sbjct: 79  DKYYNLFHGLECVDNRAFCLLLWAALLPMVG-MNTSSILT 117


>08_01_0722 +
           6412654-6412860,6413142-6413687,6413745-6413877,
           6413917-6414035,6414128-6414883,6415209-6415258,
           6415560-6416679
          Length = 976

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -1

Query: 649 KPPFPRGLADXLMXKKPPXPP-PXPXKI 569
           KPP P    + L  KKPP PP P   K+
Sbjct: 563 KPPIPAKKLEQLAQKKPPSPPKPKKPKV 590


>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 20/80 (25%), Positives = 26/80 (32%)
 Frame = +3

Query: 678 PXPXXPXPRVXRVGGXRFXXPQRGGXXVXPKNPGXNXXKKPXXXKGXQKXXNPXKGPXXX 857
           P P    P++ R        P      V    PG    + P   +  Q      + P   
Sbjct: 139 PAPGMMQPQISRPPMPNLSAPPVAYPQVVRPPPG----QMPPPMRPPQMPIPFQRPPGVP 194

Query: 858 GFFPXGPPPPXXXXQKNPXP 917
             FP GPPPP     + P P
Sbjct: 195 PAFPGGPPPPPGPFMRGPPP 214


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +3

Query: 663 PPSRSPXPXXPXPRVXRVGGXRFXXPQRGGXXVXPKNPG 779
           PP + P P  P P   + GG     P +GG    P  PG
Sbjct: 357 PPPKGPSPPPPPPPGGKKGGPP-PPPPKGGASRPPAAPG 394


>02_01_0458 +
           3291563-3291733,3292082-3292769,3292847-3293363,
           3293438-3293637,3294137-3294372,3294469-3295302
          Length = 881

 Score = 23.4 bits (48), Expect(2) = 9.6
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -1

Query: 625 ADXLMXKKPPXPPPXP 578
           A  LM   PP PPP P
Sbjct: 348 APKLMPPPPPPPPPPP 363



 Score = 23.0 bits (47), Expect(2) = 9.6
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 601 PPXPPPXPXKIK 566
           PP PPP P  IK
Sbjct: 370 PPRPPPPPPPIK 381


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,052,811
Number of Sequences: 37544
Number of extensions: 339217
Number of successful extensions: 1168
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)