Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_K11
         (925 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily a...    29   6.2  
Z79596-1|CAB01857.1|  830|Caenorhabditis elegans Hypothetical pr...    28   8.2  
L29031-1|AAB72228.2|  830|Caenorhabditis elegans dynamin protein.      28   8.2  
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    28   8.2  

>AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 268 protein.
          Length = 881

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -1

Query: 646 PPFPRGLADXLMXKKPPXPPPXPXKIK 566
           PP P  L   L    PP PPP P  +K
Sbjct: 70  PPPPPPLISILQQAPPPPPPPPPPTLK 96


>Z79596-1|CAB01857.1|  830|Caenorhabditis elegans Hypothetical
           protein C02C6.1a protein.
          Length = 830

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 24/74 (32%), Positives = 26/74 (35%)
 Frame = +3

Query: 663 PPSRSPXPXXPXPRVXRVGGXRFXXPQRGGXXVXPKNPGXNXXKKPXXXKGXQKXXNPXK 842
           P    P P  P P     GG +   P RGG    P  PG    + P    G      P  
Sbjct: 758 PHPSGPSPV-PRPAPAPPGGRQAPMPPRGGPGAPPP-PG---MRPPPGAPGGGGGMYPPL 812

Query: 843 GPXXXGFFPXGPPP 884
            P   G  P GPPP
Sbjct: 813 IPTRPG--PGGPPP 824


>L29031-1|AAB72228.2|  830|Caenorhabditis elegans dynamin protein.
          Length = 830

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 24/74 (32%), Positives = 26/74 (35%)
 Frame = +3

Query: 663 PPSRSPXPXXPXPRVXRVGGXRFXXPQRGGXXVXPKNPGXNXXKKPXXXKGXQKXXNPXK 842
           P    P P  P P     GG +   P RGG    P  PG    + P    G      P  
Sbjct: 758 PHPSGPSPV-PRPAPAPPGGRQAPMPPRGGPGAPPP-PG---MRPPPGAPGGGGGMYPPL 812

Query: 843 GPXXXGFFPXGPPP 884
            P   G  P GPPP
Sbjct: 813 IPTRPG--PGGPPP 824


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 27/97 (27%), Positives = 31/97 (31%)
 Frame = +3

Query: 627 NPRGKGGFXXXGPPSRSPXPXXPXPRVXRVGGXRFXXPQRGGXXVXPKNPGXNXXKKPXX 806
           +P+  GG     P S +P    P P+    G      P   G    P  PG      P  
Sbjct: 360 SPQSFGG--PPPPVSSAPGNFAPPPQSGPPGAFA-PPPSAFGAPQGPGGPGGYGPPPPGG 416

Query: 807 XKGXQKXXNPXKGPXXXGFFPXGPPPPXXXXQKNPXP 917
                    P  GP   GF   GPPPP       P P
Sbjct: 417 PGAPGSYGPPQGGPG--GF---GPPPPGGPGAYGPPP 448


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,275,515
Number of Sequences: 27780
Number of extensions: 277309
Number of successful extensions: 843
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)