Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_K10
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       28   1.6  
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    27   3.6  
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy...    26   8.4  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    26   8.4  

>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = -1

Query: 332 KTSSSAPFGLASSISVFRTFKSTSPLRQFPKVRNAASTXRDFVFSIVLGALRGHN---RC 162
           KT S+ PF   S++    T  +T P++    VR       +   +I  G   G +     
Sbjct: 561 KTGSNNPFAQFSNLPSQSTAPATKPMKP---VRTGDDRFSNIAQAISTGNPMGTDSFGNI 617

Query: 161 NLTKVISQHTGSE 123
            LT+V +QHTGS+
Sbjct: 618 GLTRVPTQHTGSK 630


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 305 LASSISVFRTFKSTSPLRQFPKVRNAASTXRDFVFSI 195
           L  S  VFR F+S++P   FP V  A    R F  S+
Sbjct: 9   LQLSWQVFRRFQSSNPQLSFPCVDQAQERSRQFEQSL 45


>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 314

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 788 VRLLSVNTSAITKLMTFESFFQN 856
           VRL  +NTS+   LMTFE    N
Sbjct: 63  VRLYDINTSSQMPLMTFEGHTNN 85


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 413 NEYANHINDAQNSTNQLIDFVCYKDGD 493
           +EY N + D + + N++++   YKD D
Sbjct: 569 DEYRNKLKDKEETYNEVMNAFQYKDND 595


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,384,931
Number of Sequences: 5004
Number of extensions: 65016
Number of successful extensions: 163
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)