Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_K10
         (902 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   5.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   8.8  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   8.8  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = -3

Query: 684 LFEGFHDXRRSSHQLLRIFQXRLKLLADSTVGKLCFKFKKHVLRFSVFCWKHSGPPSAMN 505
           +F   HD +R + Q+L     +   +A + +    F   + +  F  F  K  GPP+  N
Sbjct: 303 VFVDNHDTQRDNPQILTYKYSKRYKMAVAFMLSHPFGTPRIMSSFD-FQSKDQGPPNDGN 361

Query: 504 KAIRSPSL 481
             I SPS+
Sbjct: 362 GNILSPSI 369


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 849 KKLSKVINFVMALVLT 802
           K+LSK INF  +L L+
Sbjct: 468 KELSKTINFTYSLALS 483


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 143 SQHTGSENRYQDSLPHHCNKET 78
           SQ     N+ +    HHCN++T
Sbjct: 51  SQPHQDHNKEKSKNNHHCNQDT 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,660
Number of Sequences: 438
Number of extensions: 4212
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)