Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_K09
         (940 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    29   0.95 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.8  
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    26   8.8  

>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -3

Query: 650 GPXRGXGPXGXPXPKGFFXGXPP 582
           GP RG G    P P GF  G PP
Sbjct: 119 GPVRGVGYTAPPPPAGFGRGAPP 141


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 16/51 (31%), Positives = 16/51 (31%)
 Frame = +2

Query: 488 GSPPPXPRAPXXRXGXPVXPPPRGXXXXPPKWGXTPGKXLXXXGPXXAPXP 640
           G PPP P  P      P  PPP      PP      G       P   P P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPP------PPPAVSAGGSRYYAPAPQAEPEP 803



 Score = 25.8 bits (54), Expect = 8.8
 Identities = 18/53 (33%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
 Frame = +2

Query: 491 SPPPXPRAPXXRXGXPVX---PPPRGXXXXPPKWGXTPGKXLXXXGPXXAPXP 640
           SPPP P A       P     PPP      PP     PG  +   GP   P P
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG--VAGAGPPPPPPP 781



 Score = 25.8 bits (54), Expect = 8.8
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 710 PPPFXGGXXPPPGPXKXPRV 769
           PPP   G  PPP P   P V
Sbjct: 766 PPPGVAGAGPPPPPPPPPAV 785


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 491  SPPPXPRAPXXRXGXPVXPPP 553
            S PP P AP    G P  PPP
Sbjct: 1713 SVPPPPSAPPMPAGPPSAPPP 1733


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 17/49 (34%), Positives = 18/49 (36%)
 Frame = -2

Query: 639 GXGAXXGPXXXRXFPGVXPHLGGXXXXPLGGGXTGXPXRXXGARGXGGG 493
           G  A   P   R  P   P +GG    PL G   G   R  G  G  GG
Sbjct: 92  GHRAYYAPPPPRG-PLFGPRIGGGHHGPLHGPHGGFGGRGGGRMGGRGG 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,928,716
Number of Sequences: 5004
Number of extensions: 23769
Number of successful extensions: 71
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)