Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_K02
(854 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC010150-1|AAH10150.1| 187|Homo sapiens mitochondrial ribosomal... 132 1e-30
AK223069-1|BAD96789.1| 187|Homo sapiens mitochondrial ribosomal... 132 1e-30
EF152584-1|ABO34073.1| 278|Homo sapiens PC1/MRPS28 fusion prote... 90 1e-17
U84401-1|AAB41788.1| 787|Homo sapiens smoothened protein. 30 9.3
BC009989-1|AAH09989.1| 787|Homo sapiens smoothened homolog (Dro... 30 9.3
AF120103-1|AAF31757.1| 787|Homo sapiens Gx protein protein. 30 9.3
AF114821-1|AAD17202.1| 787|Homo sapiens smoothened protein. 30 9.3
AF071494-1|AAC24863.1| 787|Homo sapiens Gx protein protein. 30 9.3
>BC010150-1|AAH10150.1| 187|Homo sapiens mitochondrial ribosomal
protein S28 protein.
Length = 187
Score = 132 bits (320), Expect = 1e-30
Identities = 66/131 (50%), Positives = 93/131 (70%), Gaps = 6/131 (4%)
Frame = +3
Query: 312 SDSGNEIDKDISQEKLSGFAKAFEKQSQILENPEE------EKSYTFASLLRNSKLMDLG 473
S+SG+ K+ + + GFA A E+ S++L+ E + +FAS+LR+S L +G
Sbjct: 35 SESGSSNAKE-PKTRAGGFASALERHSELLQKVEPLQKGSPKNVESFASMLRHSPLTQMG 93
Query: 474 DPVGKTVIGKIFHVVEDDLYIDFGWKFHCVCTRPNLRGEEYVRGTRVRIQINDLELSSRF 653
K VIG+IFH+VE+DLYIDFG KFHCVC RP + GE+Y +GTRVR+++ DLEL+SRF
Sbjct: 94 PAKDKLVIGRIFHIVENDLYIDFGGKFHCVCRRPEVDGEKYQKGTRVRLRLLDLELTSRF 153
Query: 654 LGSSTDLTLLE 686
LG++TD T+LE
Sbjct: 154 LGATTDTTVLE 164
>AK223069-1|BAD96789.1| 187|Homo sapiens mitochondrial ribosomal
protein S28 variant protein.
Length = 187
Score = 132 bits (320), Expect = 1e-30
Identities = 66/131 (50%), Positives = 93/131 (70%), Gaps = 6/131 (4%)
Frame = +3
Query: 312 SDSGNEIDKDISQEKLSGFAKAFEKQSQILENPEE------EKSYTFASLLRNSKLMDLG 473
S+SG+ K+ + + GFA A E+ S++L+ E + +FAS+LR+S L +G
Sbjct: 35 SESGSSNAKE-PKTRAGGFASALERHSELLQKVEPLQKGSPKNVESFASMLRHSPLTQMG 93
Query: 474 DPVGKTVIGKIFHVVEDDLYIDFGWKFHCVCTRPNLRGEEYVRGTRVRIQINDLELSSRF 653
K VIG+IFH+VE+DLYIDFG KFHCVC RP + GE+Y +GTRVR+++ DLEL+SRF
Sbjct: 94 PAKDKLVIGRIFHIVENDLYIDFGGKFHCVCRRPGVDGEKYQKGTRVRLRLLDLELTSRF 153
Query: 654 LGSSTDLTLLE 686
LG++TD T+LE
Sbjct: 154 LGATTDTTVLE 164
>EF152584-1|ABO34073.1| 278|Homo sapiens PC1/MRPS28 fusion protein
protein.
Length = 278
Score = 89.8 bits (213), Expect = 1e-17
Identities = 47/98 (47%), Positives = 65/98 (66%), Gaps = 1/98 (1%)
Frame = +3
Query: 300 SLRYSDSGNEIDKDISQEKLSGFAKAFEKQSQILE-NPEEEKSYTFASLLRNSKLMDLGD 476
S +S G+ I K + K S K+FE++ + L+ +P+ +S FAS+LR+S L +G
Sbjct: 151 SAAFSSVGSVITKKLEDVKNSPTFKSFEEKVENLKGSPKNVES--FASMLRHSPLTQMGP 208
Query: 477 PVGKTVIGKIFHVVEDDLYIDFGWKFHCVCTRPNLRGE 590
K VIG+IFH+VE+DLYIDFG KFHCVC RP + GE
Sbjct: 209 AKDKLVIGRIFHIVENDLYIDFGGKFHCVCRRPEVDGE 246
>U84401-1|AAB41788.1| 787|Homo sapiens smoothened protein.
Length = 787
Score = 30.3 bits (65), Expect = 9.3
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +3
Query: 297 TSLRYSDSGNEIDKDISQEKLSGFAKAFEKQSQILENPEEEKSYTFASLLRNSKLMDL 470
T R + ++ K I + K+ AKAF K+ ++L+NP +E S++ ++ + + L
Sbjct: 548 TWCRLTGQSDDEPKRIKKSKM--IAKAFSKRHELLQNPGQELSFSMHTVSHDGPVAGL 603
>BC009989-1|AAH09989.1| 787|Homo sapiens smoothened homolog
(Drosophila) protein.
Length = 787
Score = 30.3 bits (65), Expect = 9.3
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +3
Query: 297 TSLRYSDSGNEIDKDISQEKLSGFAKAFEKQSQILENPEEEKSYTFASLLRNSKLMDL 470
T R + ++ K I + K+ AKAF K+ ++L+NP +E S++ ++ + + L
Sbjct: 548 TWCRLTGQSDDEPKRIKKSKM--IAKAFSKRHELLQNPGQELSFSMHTVSHDGPVAGL 603
>AF120103-1|AAF31757.1| 787|Homo sapiens Gx protein protein.
Length = 787
Score = 30.3 bits (65), Expect = 9.3
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +3
Query: 297 TSLRYSDSGNEIDKDISQEKLSGFAKAFEKQSQILENPEEEKSYTFASLLRNSKLMDL 470
T R + ++ K I + K+ AKAF K+ ++L+NP +E S++ ++ + + L
Sbjct: 548 TWCRLTGQSDDEPKRIKKSKM--IAKAFSKRHELLQNPGQELSFSMHTVSHDGPVAGL 603
>AF114821-1|AAD17202.1| 787|Homo sapiens smoothened protein.
Length = 787
Score = 30.3 bits (65), Expect = 9.3
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +3
Query: 297 TSLRYSDSGNEIDKDISQEKLSGFAKAFEKQSQILENPEEEKSYTFASLLRNSKLMDL 470
T R + ++ K I + K+ AKAF K+ ++L+NP +E S++ ++ + + L
Sbjct: 548 TWCRLTGQSDDEPKRIKKSKM--IAKAFSKRHELLQNPGQELSFSMHTVSHDGPVAGL 603
>AF071494-1|AAC24863.1| 787|Homo sapiens Gx protein protein.
Length = 787
Score = 30.3 bits (65), Expect = 9.3
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +3
Query: 297 TSLRYSDSGNEIDKDISQEKLSGFAKAFEKQSQILENPEEEKSYTFASLLRNSKLMDL 470
T R + ++ K I + K+ AKAF K+ ++L+NP +E S++ ++ + + L
Sbjct: 548 TWCRLTGQSDDEPKRIKKSKM--IAKAFSKRHELLQNPGQELSFSMHTVSHDGPVAGL 603
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,297,311
Number of Sequences: 237096
Number of extensions: 2068565
Number of successful extensions: 2688
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2688
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10872716010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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