Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_J22
         (845 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.      116   2e-28
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.7  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   2.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.5  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   4.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.2  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score =  116 bits (280), Expect = 2e-28
 Identities = 69/205 (33%), Positives = 114/205 (55%), Gaps = 14/205 (6%)
 Frame = +1

Query: 208 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI 387
           Q +E+F+   L+  +L  I   G++KP+ +Q+ A+   + GRD++A AQ+G+GKTA F++
Sbjct: 193 QPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAV 252

Query: 388 SIL-----QQIDTSIR----ECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 540
            I+     + +D  +     E Q +I++PTREL  QI + ++    +   K     GGT+
Sbjct: 253 PIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTS 312

Query: 541 VREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQI---- 708
           V     +L +G H++V TPGR+ D + +  +  ++++  VLDEAD ML  GF   I    
Sbjct: 313 VMHQRGKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMGFLPSIEKMV 372

Query: 709 -HDVFXMLSADVQVIXLSATMPDXV 780
            H+    L  + Q +  SAT PD V
Sbjct: 373 DHETMVPL-GERQTLMFSATFPDEV 396


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 353 SQELEKLLLSLYRFYNKSIQAFVNV 427
           S++ E+L+  L+R YNK I+   N+
Sbjct: 24  SEDEERLVRDLFRGYNKLIRPVQNM 48


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 16/65 (24%), Positives = 26/65 (40%)
 Frame = -2

Query: 628  HDELSYHIHDLECPPPHEHHSPVGEYLHGHWCHQCKHGI*HSSDHQELSPPSEFVGPALL 449
            ++EL++   +  CPPP    S  G    G     C +   H    +E   PS+ +     
Sbjct: 1689 YEELNHCAPNRRCPPPPRMGSAEGLSHRGMEDEICPYATFHLLGFREEMDPSKAMQFQTF 1748

Query: 448  WEPGS 434
              PG+
Sbjct: 1749 PHPGN 1753


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 544 GHWCHQCKHGI*HSS 500
           G  CH+CK+GI  SS
Sbjct: 40  GDSCHKCKYGIAMSS 54


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -2

Query: 634 EAHDELSYHIHDLECPPPHEHHSP 563
           + H  L  H H L+     +HH P
Sbjct: 139 QRHHHLQNHHHHLQSTAVQDHHRP 162


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 699 LETSGQHFISFIKNKKFDGVGMKRTTSYHIIY-TTWSA 589
           L+    H I+ I +K F GVG+    S+  I+   W++
Sbjct: 120 LQVFRDHLINQIPDKSFPGVGVIDFESWRPIFRQNWAS 157


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
 Frame = +3

Query: 237 PQRRIVERHIRLWF*KTFC----NPATRNNAL 320
           P +++    I  WF  TFC    N AT  NA+
Sbjct: 521 PDKQLTLNEIYNWFQNTFCYFRRNAATWKNAV 552


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +3

Query: 522 LHWWHQCP 545
           LH WH CP
Sbjct: 470 LHHWHHCP 477


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,061
Number of Sequences: 438
Number of extensions: 5593
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)