Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_J18
         (966 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein ...    31   1.6  
EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transport...    31   1.6  

>U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein
            related protein 2 protein.
          Length = 1272

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 19/87 (21%), Positives = 38/87 (43%)
 Frame = -2

Query: 323  QIKDAGNPK*LDLVXLGATNMLKILHHANNQKSLTDFHX*YCSLVXCPSXTQILHNNSMV 144
            QI+D    +    V   A   ++ +H  N Q+    FH  YC  +  P  T + H ++  
Sbjct: 877  QIRDTQLLEEAGKVASQAVEHIRTVHSLNRQEQ---FHFTYCEYLREPFNTNLKHAHTYG 933

Query: 143  IIIXFTXKLLFNAFVVGRFVFVVKIHQ 63
             +  F+  L+F  +    ++  + ++Q
Sbjct: 934  AVFAFSQSLIFFMYAAAFYLGSIFVNQ 960


>EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transporter
            PGP-2 protein.
          Length = 1272

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 19/87 (21%), Positives = 38/87 (43%)
 Frame = -2

Query: 323  QIKDAGNPK*LDLVXLGATNMLKILHHANNQKSLTDFHX*YCSLVXCPSXTQILHNNSMV 144
            QI+D    +    V   A   ++ +H  N Q+    FH  YC  +  P  T + H ++  
Sbjct: 877  QIRDTQLLEEAGKVASQAVEHIRTVHSLNRQEQ---FHFTYCEYLREPFNTNLKHAHTYG 933

Query: 143  IIIXFTXKLLFNAFVVGRFVFVVKIHQ 63
             +  F+  L+F  +    ++  + ++Q
Sbjct: 934  AVFAFSQSLIFFMYAAAFYLGSIFVNQ 960


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,893,072
Number of Sequences: 27780
Number of extensions: 205123
Number of successful extensions: 334
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2500474882
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)