Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_J17
         (921 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863...    33   0.24 
12_02_1174 - 26696869-26698191                                         31   0.97 
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817           30   3.0  
06_03_0905 + 25843547-25844314                                         29   3.9  
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    29   5.2  
11_06_0610 - 25449085-25453284                                         28   9.1  
01_01_0570 - 4231100-4232560                                           28   9.1  

>03_02_0455 -
           8630543-8630893,8630994-8631068,8631149-8631223,
           8631332-8631397,8631891-8631967,8632659-8633070
          Length = 351

 Score = 33.5 bits (73), Expect = 0.24
 Identities = 18/59 (30%), Positives = 21/59 (35%)
 Frame = +2

Query: 641 RXPTEPGXXPGXNXLTKXPPXSQEPVKRPPXLAXPHXXRPPXRAPPKTXXXXRGGXNPP 817
           + P  PG  P  +     PP  Q P   PP    P     P   PP+      GG  PP
Sbjct: 249 KPPAAPGTLPNGSGGPPRPPPPQVP-PPPPQAPPPPPPNAPMGMPPRIPPPPVGGTQPP 306


>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 31.5 bits (68), Expect = 0.97
 Identities = 15/46 (32%), Positives = 18/46 (39%)
 Frame = +2

Query: 647 PTEPGXXPGXNXLTKXPPXSQEPVKRPPXLAXPHXXRPPXRAPPKT 784
           P  P   P     +  PP  Q   + PP L  P    PP   PP+T
Sbjct: 187 PPSPPPPPPTRPPSVKPPVVQPKPQPPPTLPPPSPPPPPPTVPPRT 232



 Score = 28.7 bits (61), Expect = 6.9
 Identities = 15/51 (29%), Positives = 18/51 (35%)
 Frame = +2

Query: 626 PKXVXRXPTEPGXXPGXNXLTKXPPXSQEPVKRPPXLAXPHXXRPPXRAPP 778
           P  +   P  P   P     +  PP  Q   + PP L  P    PP   PP
Sbjct: 149 PPSLPPPPPPPPPPPPPRPPSVKPPVVQPKPQPPPSLQPPSPPPPPPTRPP 199


>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
          Length = 883

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 15/32 (46%), Positives = 15/32 (46%)
 Frame = +2

Query: 683 LTKXPPXSQEPVKRPPXLAXPHXXRPPXRAPP 778
           L   PP    PV  PP LA P    PP  APP
Sbjct: 442 LVPTPPAHAPPVATPPTLATP-VPTPPVTAPP 472


>06_03_0905 + 25843547-25844314
          Length = 255

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 23/74 (31%), Positives = 25/74 (33%), Gaps = 9/74 (12%)
 Frame = +2

Query: 623 HPKXVXRXPTEPGXXPGXNXLTKXPPXSQ---EPVKRPPXLAXP------HXXRPPXRAP 775
           HPK     P+ PG   G    T  PP       PV RPP L  P      H  + P   P
Sbjct: 40  HPKPSHPSPS-PGHPKGPKNPTPRPPKGPTYPSPVTRPPPLVAPPKVPVTHPPKGPVTRP 98

Query: 776 PKTXXXXRGGXNPP 817
           P           PP
Sbjct: 99  PPVTYPTPPVTTPP 112


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 16/52 (30%), Positives = 20/52 (38%)
 Frame = +2

Query: 626 PKXVXRXPTEPGXXPGXNXLTKXPPXSQEPVKRPPXLAXPHXXRPPXRAPPK 781
           P  +   P  P    G N  +  PP    P   PP  A P    PP + PP+
Sbjct: 85  PPQMYYQPPPPPPPYGVN--SSQPPPPPPPPPSPPPSAPPPPPPPPTQPPPR 134


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +2

Query: 695 PPXSQEPVKRPPXLAXPHXXRPPXRAPPKTXXXXRGGXNPP 817
           PP  +E    PP  + P    PP  +P K+        +PP
Sbjct: 760 PPTPEEYTPSPPKSSPPEEKSPPPHSPEKSPPSEAHPTSPP 800


>01_01_0570 - 4231100-4232560
          Length = 486

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = -1

Query: 777 GGARXGGRXXWGXASXGGLFTGSWLXGGXLVNXXXPGXXPGSVG 646
           GG   GG   +G  + GG   G  + GG  V     G   G +G
Sbjct: 214 GGGGMGGGSGFGGGAGGGFGAGGGVGGGIGVGGGMGGGASGGIG 257


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,431,123
Number of Sequences: 37544
Number of extensions: 176942
Number of successful extensions: 680
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)