Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_J17
(921 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC111727-1|AAI11728.1| 1077|Homo sapiens transcription elongatio... 36 0.16
AF017789-1|AAB80727.1| 1098|Homo sapiens putative transcription ... 36 0.16
AB209910-1|BAD93147.1| 1081|Homo sapiens transcription elongatio... 36 0.16
AK090435-1|BAC03416.1| 1766|Homo sapiens FLJ00353 protein protein. 32 3.4
AF182077-1|AAF62874.1| 1509|Homo sapiens glioma tumor suppressor... 32 3.4
AC007956-2|AAF61275.1| 1822|Homo sapiens unknown protein. 32 3.4
M98776-1|AAB47721.1| 644|Homo sapiens keratin 1 protein. 31 4.5
BC063697-1|AAH63697.1| 644|Homo sapiens keratin 1 (epidermolyti... 31 4.5
AF304164-1|AAG41947.1| 644|Homo sapiens keratin 1 protein. 31 4.5
AF237621-1|AAF60327.1| 644|Homo sapiens keratin 1 protein. 31 4.5
BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein. 31 7.8
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su... 31 7.8
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro... 31 7.8
AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein pro... 31 7.8
AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein pro... 31 7.8
AB015644-1|BAA34957.1| 229|Homo sapiens RNA binding protein pro... 31 7.8
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein. 31 7.8
>BC111727-1|AAI11728.1| 1077|Homo sapiens transcription elongation
regulator 1 protein.
Length = 1077
Score = 36.3 bits (80), Expect = 0.16
Identities = 29/102 (28%), Positives = 33/102 (32%), Gaps = 4/102 (3%)
Frame = +2
Query: 527 GEXRLAYGALFRFXRPLTP--CXXXXXXXXXXXXHPKXVXRXPTEPGXXP-GXNXLTKXP 697
GE R+A RF P P P + R P P P G
Sbjct: 17 GELRMAQQQALRFRGPAPPPNAVMRGPPPLMRPPPPFGMMRGPPPPPRPPFGRPPFDPNM 76
Query: 698 PXSQEPVKRPPXLAXPHXXRPPXRAPPKTXXXXRGGXN-PPG 820
P P PP + PH RPP PP + G PPG
Sbjct: 77 PPMPPPGGIPPPMGPPHLQRPPFMPPPMSSMPPPPGMMFPPG 118
>AF017789-1|AAB80727.1| 1098|Homo sapiens putative transcription
factor CA150 protein.
Length = 1098
Score = 36.3 bits (80), Expect = 0.16
Identities = 29/102 (28%), Positives = 33/102 (32%), Gaps = 4/102 (3%)
Frame = +2
Query: 527 GEXRLAYGALFRFXRPLTP--CXXXXXXXXXXXXHPKXVXRXPTEPGXXP-GXNXLTKXP 697
GE R+A RF P P P + R P P P G
Sbjct: 17 GELRMAQQQALRFRGPAPPPNAVMRGPPPLMRPPPPFGMMRGPPPPPRPPFGRPPFDPNM 76
Query: 698 PXSQEPVKRPPXLAXPHXXRPPXRAPPKTXXXXRGGXN-PPG 820
P P PP + PH RPP PP + G PPG
Sbjct: 77 PPMPPPGGIPPPMGPPHLQRPPFMPPPMSSMPPPPGMMFPPG 118
>AB209910-1|BAD93147.1| 1081|Homo sapiens transcription elongation
regulator 1 variant protein.
Length = 1081
Score = 36.3 bits (80), Expect = 0.16
Identities = 29/102 (28%), Positives = 33/102 (32%), Gaps = 4/102 (3%)
Frame = +2
Query: 527 GEXRLAYGALFRFXRPLTP--CXXXXXXXXXXXXHPKXVXRXPTEPGXXP-GXNXLTKXP 697
GE R+A RF P P P + R P P P G
Sbjct: 21 GELRMAQQQALRFRGPAPPPNAVMRGPPPLMRPPPPFGMMRGPPPPPRPPFGRPPFDPNM 80
Query: 698 PXSQEPVKRPPXLAXPHXXRPPXRAPPKTXXXXRGGXN-PPG 820
P P PP + PH RPP PP + G PPG
Sbjct: 81 PPMPPPGGIPPPMGPPHLQRPPFMPPPMSSMPPPPGMMFPPG 122
>AK090435-1|BAC03416.1| 1766|Homo sapiens FLJ00353 protein protein.
Length = 1766
Score = 31.9 bits (69), Expect = 3.4
Identities = 19/52 (36%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Frame = +2
Query: 626 PKXVXRXPTEPGXXPGXNXLTKXPPX-SQEPVKRPPXLAXPHXXRPPXRAPP 778
P R P G PG PP S PV RPP P PP PP
Sbjct: 1134 PPGSYRPPPPMGKPPGSIVRPSAPPARSSVPVTRPPVPIPPPPPPPPLPPPP 1185
>AF182077-1|AAF62874.1| 1509|Homo sapiens glioma tumor suppressor
candidate region protein 1 protein.
Length = 1509
Score = 31.9 bits (69), Expect = 3.4
Identities = 18/54 (33%), Positives = 21/54 (38%)
Frame = +2
Query: 656 PGXXPGXNXLTKXPPXSQEPVKRPPXLAXPHXXRPPXRAPPKTXXXXRGGXNPP 817
P PG + P Q P+ P L PH RPP R P + R PP
Sbjct: 716 PLKGPGPSSSPSLP--HQAPLGDSPHLPSPHPTRPPSRPPSRPQSVSRPPSEPP 767
>AC007956-2|AAF61275.1| 1822|Homo sapiens unknown protein.
Length = 1822
Score = 31.9 bits (69), Expect = 3.4
Identities = 19/52 (36%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Frame = +2
Query: 626 PKXVXRXPTEPGXXPGXNXLTKXPPX-SQEPVKRPPXLAXPHXXRPPXRAPP 778
P R P G PG PP S PV RPP P PP PP
Sbjct: 1313 PPGSYRPPPPMGKPPGSIVRPSAPPARSSVPVTRPPVPIPPPPPPPPLPPPP 1364
>M98776-1|AAB47721.1| 644|Homo sapiens keratin 1 protein.
Length = 644
Score = 31.5 bits (68), Expect = 4.5
Identities = 19/56 (33%), Positives = 20/56 (35%)
Frame = -1
Query: 816 GGFXPPLXXXXVFGGARXGGRXXWGXASXGGLFTGSWLXGGXLVNXXXPGXXPGSV 649
GGF FGG GG G S GG F G GG P PG +
Sbjct: 97 GGFGGGGFGGGGFGGGGIGGGGFGGFGSGGGGFGGGGFGGGGYGGGYGPVCPPGGI 152
>BC063697-1|AAH63697.1| 644|Homo sapiens keratin 1 (epidermolytic
hyperkeratosis) protein.
Length = 644
Score = 31.5 bits (68), Expect = 4.5
Identities = 19/56 (33%), Positives = 20/56 (35%)
Frame = -1
Query: 816 GGFXPPLXXXXVFGGARXGGRXXWGXASXGGLFTGSWLXGGXLVNXXXPGXXPGSV 649
GGF FGG GG G S GG F G GG P PG +
Sbjct: 97 GGFGGGGFGGGGFGGGGIGGGGFGGFGSGGGGFGGGGFGGGGYGGGYGPVCPPGGI 152
>AF304164-1|AAG41947.1| 644|Homo sapiens keratin 1 protein.
Length = 644
Score = 31.5 bits (68), Expect = 4.5
Identities = 19/56 (33%), Positives = 20/56 (35%)
Frame = -1
Query: 816 GGFXPPLXXXXVFGGARXGGRXXWGXASXGGLFTGSWLXGGXLVNXXXPGXXPGSV 649
GGF FGG GG G S GG F G GG P PG +
Sbjct: 97 GGFGGGGFGGGGFGGGGIGGGGFGGFGSGGGGFGGGGFGGGGYGGGYGPVCPPGGI 152
>AF237621-1|AAF60327.1| 644|Homo sapiens keratin 1 protein.
Length = 644
Score = 31.5 bits (68), Expect = 4.5
Identities = 19/56 (33%), Positives = 20/56 (35%)
Frame = -1
Query: 816 GGFXPPLXXXXVFGGARXGGRXXWGXASXGGLFTGSWLXGGXLVNXXXPGXXPGSV 649
GGF FGG GG G S GG F G GG P PG +
Sbjct: 97 GGFGGGGFGGGGFGGGGIGGGGFGGFGSGGGGFGGGGFGGGGYGGGYGPVCPPGGI 152
>BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.
Length = 1022
Score = 30.7 bits (66), Expect = 7.8
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +2
Query: 698 PXSQEPVKRPPXLAXPHXXRPPXRAPPKTXXXXRGGXNPP 817
P SQEPV PP A P R P ++P K +PP
Sbjct: 385 PLSQEPVN-PPSEASPTRDRSPPKSPEKLPQSSSSESSPP 423
>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator
subunit SRm300 protein.
Length = 2296
Score = 30.7 bits (66), Expect = 7.8
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +2
Query: 698 PXSQEPVKRPPXLAXPHXXRPPXRAPPKTXXXXRGGXNPP 817
P SQEPV PP A P R P ++P K +PP
Sbjct: 385 PLSQEPVN-PPSEASPTRDRSPPKSPEKLPQSSSSESSPP 423
>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein
protein.
Length = 2752
Score = 30.7 bits (66), Expect = 7.8
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +2
Query: 698 PXSQEPVKRPPXLAXPHXXRPPXRAPPKTXXXXRGGXNPP 817
P SQEPV PP A P R P ++P K +PP
Sbjct: 385 PLSQEPVN-PPSEASPTRDRSPPKSPEKLPQSSSSESSPP 423
>AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein
protein.
Length = 956
Score = 30.7 bits (66), Expect = 7.8
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +2
Query: 698 PXSQEPVKRPPXLAXPHXXRPPXRAPPKTXXXXRGGXNPP 817
P SQEPV PP A P R P ++P K +PP
Sbjct: 350 PLSQEPVN-PPSEASPTRDRSPPKSPEKLPQSSSSESSPP 388
>AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein
protein.
Length = 1262
Score = 30.7 bits (66), Expect = 7.8
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +2
Query: 698 PXSQEPVKRPPXLAXPHXXRPPXRAPPKTXXXXRGGXNPP 817
P SQEPV PP A P R P ++P K +PP
Sbjct: 175 PLSQEPVN-PPSEASPTRDRSPPKSPEKLPQSSSSESSPP 213
>AB015644-1|BAA34957.1| 229|Homo sapiens RNA binding protein
protein.
Length = 229
Score = 30.7 bits (66), Expect = 7.8
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +2
Query: 698 PXSQEPVKRPPXLAXPHXXRPPXRAPPKTXXXXRGGXNPP 817
P SQEPV PP A P R P ++P K +PP
Sbjct: 189 PLSQEPVN-PPSEASPTRDRSPPKSPEKLPQSSSSESSPP 227
>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
Length = 2800
Score = 30.7 bits (66), Expect = 7.8
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +2
Query: 698 PXSQEPVKRPPXLAXPHXXRPPXRAPPKTXXXXRGGXNPP 817
P SQEPV PP A P R P ++P K +PP
Sbjct: 433 PLSQEPVN-PPSEASPTRDRSPPKSPEKLPQSSSSESSPP 471
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,977,157
Number of Sequences: 237096
Number of extensions: 1121462
Number of successful extensions: 3103
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2942
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11992411152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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