Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_J16
         (847 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   0.66 
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    25   1.2  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   3.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   3.5  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    23   4.7  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.7  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   4.7  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 25.4 bits (53), Expect = 0.66
 Identities = 7/24 (29%), Positives = 17/24 (70%)
 Frame = +2

Query: 452 ITELPVKCIVIIALDWRTIFIHKK 523
           + ++ V C++I+ L W + +IH++
Sbjct: 248 LIQVYVPCVLIVVLSWVSFWIHRE 271


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 487 NNDNAFNR*LCYNTIFYNTVP 425
           NNDN +N+ L YN  +   +P
Sbjct: 97  NNDNNYNKKLYYNINYIEQIP 117


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 250 HTGIVEMIHSDKLLFFLVLY 191
           HT  ++ +H  K +F L+LY
Sbjct: 26  HTADMDFLHKQKKIFDLLLY 45


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 250 HTGIVEMIHSDKLLFFLVLY 191
           HT  ++ +H  K +F L+LY
Sbjct: 26  HTADMDFLHKQKKIFDLLLY 45


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 487 NNDNAFNR*LCYNTIFYNTVP 425
           NN+N +N+ L YN  +   +P
Sbjct: 97  NNNNNYNKKLYYNINYIEQIP 117


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -2

Query: 477 MHLTGSSVITRYFTTRFHFNT-DRKISPKSSYNTVFLQ 367
           M +  SSV+       FH  T DR + P S    +FLQ
Sbjct: 333 MFMVASSVVLTVLVLNFHHRTPDRYVMP-SWIKMLFLQ 369


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -2

Query: 477 MHLTGSSVITRYFTTRFHFNT-DRKISPKSSYNTVFLQ 367
           M +  SSV+       FH  T DR + P S    +FLQ
Sbjct: 333 MFMVASSVVLTVLVLNFHHRTPDRYVMP-SWIKMLFLQ 369


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 487 NNDNAFNR*LCYNTIFYNTVP 425
           NN+N +N+ L YN  +   +P
Sbjct: 335 NNNNNYNKKLYYNINYIEQIP 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,752
Number of Sequences: 438
Number of extensions: 4531
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)