Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_J14
         (857 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.89 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   4.8  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    22   6.3  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   8.3  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 567 SPRRGRYPTPSRERERCPSHRPVPFARRSRTRARE 671
           SP   +  TP +ER+   + +PV  +R+ + ++ E
Sbjct: 782 SPNSTKETTPKKERKTATTTQPVISSRKEQKKSEE 816


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 375 TSRLTWNLSLSAFMLEXEVTRCSRELSPR 289
           TSR+  + SL  F ++  VT     +SPR
Sbjct: 254 TSRIVISESLKHFTIQSSVTTSKMMVSPR 282


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +1

Query: 547 IRRGSHHHRAEEGTRRRQGREKGAHRTDRSRSQGDQGPER 666
           I R   H R   G +R+  R+K      R  +    GP+R
Sbjct: 3   ISRDHWHKRRATGGKRKPIRKKRKFELGRPAANTKLGPQR 42


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +3

Query: 459 TSTGIFQGSSSDVTRCLKARRLRLWNRGC 545
           T   +F G  SD+      + L +W  GC
Sbjct: 241 TLVTMFTGLKSDIPPVAYVKALDVWMAGC 269


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,939
Number of Sequences: 438
Number of extensions: 4572
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)