Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_J13
         (858 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    31   1.1  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    31   1.1  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    31   1.1  
U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequen...    28   7.4  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/37 (40%), Positives = 15/37 (40%)
 Frame = -3

Query: 391 GGVFFXPXFXGGXPXPXGXFFFXGGXXPPPXGGXXXP 281
           GG    P   GG P P G     GG  PPP  G   P
Sbjct: 701 GGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPP 737


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/37 (40%), Positives = 15/37 (40%)
 Frame = -3

Query: 391 GGVFFXPXFXGGXPXPXGXFFFXGGXXPPPXGGXXXP 281
           GG    P   GG P P G     GG  PPP  G   P
Sbjct: 701 GGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPP 737


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/37 (40%), Positives = 15/37 (40%)
 Frame = -3

Query: 391 GGVFFXPXFXGGXPXPXGXFFFXGGXXPPPXGGXXXP 281
           GG    P   GG P P G     GG  PPP  G   P
Sbjct: 284 GGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPP 320


>U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequence
           x-hybridizingprotein 1 protein.
          Length = 589

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 16/49 (32%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
 Frame = +2

Query: 296 PPXGGXXAPPKKKXTXXXGGXPXKXGXKKNPP-XGXXXXFXGXGAPXGG 439
           PP GG   P         GG P      + PP  G    F   GAP  G
Sbjct: 176 PPSGGPPGPFGPSGAPPSGGPPGPFNPSEAPPSGGPTGPFDPSGAPPSG 224



 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/49 (32%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
 Frame = +2

Query: 296 PPXGGXXAPPKKKXTXXXGGXPXKXGXKKNPP-XGXXXXFXGXGAPXGG 439
           PP GG   P         GG P        PP  G    F   GAP  G
Sbjct: 401 PPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSG 449



 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/49 (32%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
 Frame = +2

Query: 296 PPXGGXXAPPKKKXTXXXGGXPXKXGXKKNPP-XGXXXXFXGXGAPXGG 439
           PP GG   P         GG P        PP  G    F   GAP  G
Sbjct: 431 PPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSG 479


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,715,513
Number of Sequences: 27780
Number of extensions: 128612
Number of successful extensions: 349
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)