Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_J12
(911 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 29 0.92
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 29 1.2
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.6
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc... 28 2.1
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 28 2.1
SPBC19F8.02 |||nuclear distribution protein NUDC |Schizosaccharo... 27 2.8
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 27 2.8
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 27 2.8
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe... 27 3.7
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch... 27 3.7
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 27 3.7
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 4.9
SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c... 27 4.9
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 26 6.5
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 26 6.5
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce... 26 6.5
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 6.5
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 26 8.5
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 26 8.5
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 26 8.5
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 29.1 bits (62), Expect = 0.92
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +1
Query: 304 EGEWEQVVKDTFYTHAKKACDEANRIKKEKEEADKRLKEIQQRKEQERLANDFEPATVTE 483
E + + +++ A+ A +EANR E+EEA KR I++R R A + E + E
Sbjct: 783 EQKLAEAIREAEEEAARAAEEEANRELHEQEEAQKR--AIEERTRAAREAKEREQREMAE 840
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 28.7 bits (61), Expect = 1.2
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = -1
Query: 332 SLTTCSHS-PSRPPVKKSVFLDKKLTIVFSRSFTPPSCCCA-IARSMESNLSGS 177
+L+ +H+ P PV + LD I+ R F PP C +ARS++S+ S S
Sbjct: 395 ALSDLAHNIPPLLPVIQERLLDMLSKILSGRPFIPPGCPPQYVARSLKSSKSAS 448
>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 608
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 133 VPVTYRLNTKVNMANDPERFDSMLLAMAQQHEGGVKDLL 249
V Y LN+K+N+ N PE+ S L + +KD+L
Sbjct: 500 VEKVYDLNSKINLKNIPEQSISRLSTLKWNEGTTIKDVL 538
>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
Taz1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 663
Score = 27.9 bits (59), Expect = 2.1
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Frame = +1
Query: 229 GGVKDLLNTIVSFLSRKTDFFTGGREGEWEQVVKDTFYTHAKKACDE--ANRIKKEKEEA 402
G V L+ I LS T + ++ + + + AK + ANR K +
Sbjct: 432 GLVSSALDKITGLLSADNLSETVSQARDFSHTLSKSLKSRAKSLSQKEAANRSKLIAKRG 491
Query: 403 DKRLKEIQQRKEQERLANDFEP 468
D +E EQ+ L+ DF P
Sbjct: 492 DNLRREASLSSEQDDLSEDFPP 513
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +1
Query: 301 REGEWEQVVKDT---FYTHAKKACDEANRIKKEKEEADKRLKEIQQRKEQERLAND 459
+ G+ E+ +KD+ F + + + +++ KEE K + E+ R E +LA +
Sbjct: 1338 QRGDLEKALKDSEKNFLRKEAEMTENIHSLEEGKEETKKEIAELSSRLEDNQLATN 1393
>SPBC19F8.02 |||nuclear distribution protein NUDC
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 670 YKWTQTLEEVEIRVPLRQILRPRDLTVVINKKHLKVGI 783
Y+W QT+ +V+I + + + R + L V ++ LK+ I
Sbjct: 11 YEWDQTIADVDIVIHVPKGTRAKSLQVDMSNHDLKIQI 48
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -3
Query: 279 FSRQKANYCVQQIFYAAFVLLCHS*EH-GIKSFRIVCHIYFSI 154
FSR Y V I A+ + LC + EH G KS R++ FS+
Sbjct: 138 FSRLTCAYFVLSILDASLIYLCFTSEHLGDKSTRMLFVCEFSV 180
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +1
Query: 271 SRKTDFFTGGREGEWEQVVKDTFYTHAKKACDEANRIKKEKEEADKRLKEIQQRKEQERL 450
+RK + G E E+ ++ + EA R+K+EKE + ++ ++ +EQE++
Sbjct: 62 NRKKRIYNGSAEAGKEKKLQKQRAQEERIRQKEAERLKREKERQQR--EQEKKLREQEKI 119
Query: 451 A 453
A
Sbjct: 120 A 120
>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 248
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 142 TYRLNTKVNMANDPERFDSMLLAMAQQHEGGVKDL 246
+Y LN V N+P FDS ++ EG ++ L
Sbjct: 123 SYELNDFVTNENEPVSFDSYMVPEEDLEEGSLRQL 157
>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 27.1 bits (57), Expect = 3.7
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 247 LNTIVSFLSRKTDFFTGGREGEWEQVVKDTFYTHAKKACDEANRIKKE--KEEADKRLKE 420
L+T+ +FL TDF T + + ++ D + A+ + R KE K E ++LK
Sbjct: 102 LDTVANFLDFSTDFSTLSTKKDETEIAPDCLHYIAELLFQKKEREVKEKWKNELTEKLKT 161
Query: 421 I 423
+
Sbjct: 162 L 162
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 364 DEANRIKKEKEEADKRLKEIQQRK-EQERLANDFEPATVTE 483
+E N+ K++A L+E +++K EQ+RL+ FE T E
Sbjct: 523 EEYNKWFARKQQARVELEEQRRKKKEQDRLSGKFEKMTQKE 563
Score = 26.6 bits (56), Expect = 4.9
Identities = 22/82 (26%), Positives = 36/82 (43%)
Frame = +1
Query: 217 QQHEGGVKDLLNTIVSFLSRKTDFFTGGREGEWEQVVKDTFYTHAKKACDEANRIKKEKE 396
++H+ K T+VSF+ TG + ++ Q+ KK+ + KK K
Sbjct: 254 EKHKSDNKKTFGTLVSFVEPT---ITGSEQSDYRQI-------KIKKS-----KKKKSKS 298
Query: 397 EADKRLKEIQQRKEQERLANDF 462
+ KRL E+ E E +DF
Sbjct: 299 DRRKRLVELDAENENENDPSDF 320
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 349 AKKACDEANRIKKEKEEADKRLKEIQQRKEQE 444
A+KA + + + K+ ++RLK Q++K+QE
Sbjct: 625 AQKALEAKRQEEARKKREEQRLKREQEKKQQE 656
>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 374
Score = 26.6 bits (56), Expect = 4.9
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 292 TGGREGEWEQVVKDTFYTHAKKACDEANRIKKEKE-EADKRLKEIQQRKEQER 447
T R+ +EQVV + AKK + I K E + KR++ +QRK + R
Sbjct: 318 TSARKLAFEQVVHASAAKAAKKKVKSSGDISKLSESDQKKRMERERQRKMRRR 370
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 26.2 bits (55), Expect = 6.5
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 559 SGDSSDVTEPATPEEDDDPKE--KGKLKPNAGNGCDLEHYKWTQTLEEVEI 705
SGD+ D + P EDDD E G+++ +G D+++ + +E I
Sbjct: 425 SGDADDFQANSNPFEDDDKLEGANGEMEVTFTSGFDVDNNANSSEKDETTI 475
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1334
Score = 26.2 bits (55), Expect = 6.5
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = -3
Query: 780 ANLEVFLIDDHCQIAWPQNLSQRHSNLYFFQRLCPFVVLQITSISSIRFQLP 625
+++ +FL D I P+ +++R L FQR P ++LQ+ + ++P
Sbjct: 864 SDVTLFLFDHALLIVKPKTINKREL-LKVFQRPIPLLLLQLFLVDDNGLRIP 914
>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 393
Score = 26.2 bits (55), Expect = 6.5
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 4/101 (3%)
Frame = +1
Query: 136 PVTYRLNTKVNMANDPERFDSMLLAMAQQHEGGVKDLLNTIVSFLSRKTD----FFTGGR 303
P Y+L + + N+ F + + E V DL+N S+L+ D +T +
Sbjct: 275 PAYYKLIAQEAVLNNYTTFAEYYMDLLDNSESNVDDLINKASSWLNNSVDTWNVIYTLDK 334
Query: 304 EGEWEQVVKDTFYTHAKKACDEANRIKKEKEEADKRLKEIQ 426
E + D A+ DEA++ K EA +KE Q
Sbjct: 335 SPERLLKLADIKMDLAQIVQDEASQDNYLK-EACNAIKEAQ 374
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 26.2 bits (55), Expect = 6.5
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 322 VVKDTFYTHAKKACDEANRIKKEKEEADKRLKEIQQRKEQERLANDF 462
++ D ++ + N + ++K E ++RLKEIQ KE E N F
Sbjct: 974 ILIDELESYRSNQFNYQNNLVQDKNELEERLKEIQ--KELEVYNNHF 1018
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 367 EANRIKKEKEEADKRLKEIQQRKEQERL 450
E R+K E+E K L E +++KE+ER+
Sbjct: 126 ERQRLKDEEERRKKELME-KEKKEKERI 152
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/56 (23%), Positives = 25/56 (44%)
Frame = +1
Query: 256 IVSFLSRKTDFFTGGREGEWEQVVKDTFYTHAKKACDEANRIKKEKEEADKRLKEI 423
I F+ + F+ + +WE+++K K A R + +EE + K+I
Sbjct: 479 IDEFMDAELKFYKECQTSQWEEIIKSVHECIYKWAQTNLQRWLRTREELENLSKDI 534
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = +1
Query: 376 RIKKEKEEADKRLKEIQQRKEQERLAND 459
+ K+++EA+KR ++++ E+ERL +
Sbjct: 39 KTNKKEQEAEKRKAALERKAERERLEKE 66
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,809,600
Number of Sequences: 5004
Number of extensions: 49081
Number of successful extensions: 208
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -