Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_J10
(861 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1008 - 7987936-7988628,7988923-7989102 36 0.042
08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165 31 1.6
07_01_1201 - 11419851-11419913,11420090-11420311 30 2.1
12_02_1188 + 26801833-26802225 30 2.7
09_04_0446 - 17680408-17680721,17680812-17681108,17682740-17683490 30 2.7
03_06_0149 - 31987183-31987630,31987813-31987874 30 2.7
12_02_0692 - 22197582-22198214,22198761-22198935,22199089-221991... 29 3.6
05_07_0183 + 28251548-28252009,28252172-28252594 29 3.6
06_01_0964 - 7417158-7417517,7417596-7417868,7418400-7418810,741... 29 6.3
05_04_0142 - 18372751-18373338 29 6.3
05_03_0682 - 16916437-16916686,16916761-16916822,16917082-169171... 29 6.3
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 6.3
11_06_0012 + 19251085-19251666 28 8.3
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.3
06_01_0196 + 1520015-1520191,1520483-1520527,1521851-1521910,152... 28 8.3
03_02_0532 + 9255634-9257034,9257234-9257347,9257975-9258239,925... 28 8.3
>01_01_1008 - 7987936-7988628,7988923-7989102
Length = 290
Score = 35.9 bits (79), Expect = 0.042
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -3
Query: 721 RKRHASRREKGGQVSGKRQGRNRRAHEGAXQGETPG 614
R R RR GG+V+G+ R+RR GA +GE G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274
>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
Length = 430
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -1
Query: 642 RELXRGKRLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAT 514
R L RGK L+S + R PP + + V+ + GGG G P T
Sbjct: 22 RVLSRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64
>07_01_1201 - 11419851-11419913,11420090-11420311
Length = 94
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +1
Query: 580 QRWRN--PTGL*RYQAFPPGKLPRALSCSDPAAYRIP 684
Q+WR+ PTG + +FP G LP A PA R P
Sbjct: 27 QQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDRQP 63
>12_02_1188 + 26801833-26802225
Length = 130
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 691 GGQVSGKRQGRNRRAHEGAXQGETPGIFIVLSG 593
GG SGKR AHEG +G P +++V G
Sbjct: 33 GGGSSGKRSSSAAAAHEGVPEGHVP-VYVVGEG 64
>09_04_0446 - 17680408-17680721,17680812-17681108,17682740-17683490
Length = 453
Score = 29.9 bits (64), Expect = 2.7
Identities = 27/66 (40%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Frame = -1
Query: 825 DKAXRSGXXGGFVHTAPAWSERPTPE--LRYLQREL--*ESATLPEGRK---ADRYPVSG 667
D A G GG V TAP S R PE R L+R+L ESAT GRK Y +
Sbjct: 51 DDASGRGGGGGVVQTAPPASGRAAPESPSRGLKRKLGCIESAT-RMGRKKRLESEYELGA 109
Query: 666 RVGTGE 649
+G G+
Sbjct: 110 EIGQGK 115
>03_06_0149 - 31987183-31987630,31987813-31987874
Length = 169
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 727 AMRKRHASRREKGGQVSGKRQGRNRRAHEGAXQGETP 617
A+ + H R + + +R+GR R AHEG G P
Sbjct: 76 AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIGAEP 112
>12_02_0692 -
22197582-22198214,22198761-22198935,22199089-22199185,
22199359-22199473,22199546-22199633,22199972-22200063,
22200138-22200629,22201025-22201048,22201348-22203489
Length = 1285
Score = 29.5 bits (63), Expect = 3.6
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = +1
Query: 535 GSAPLNEHHKNRRSSQRWRNPTGL*RYQAFPPGKLPRALSCSDPAAYRIPVRLSPFGKR 711
GS N ++ R+S Q+ ++P A P LPRAL+ AA R+P+ P +R
Sbjct: 163 GSGKGNHRNRKRKSHQQRQSP-------AAAPSLLPRALALLADAAGRLPLGEHPDARR 214
>05_07_0183 + 28251548-28252009,28252172-28252594
Length = 294
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 734 CRYLSSGVGRSLQAGAVCTNPPXQPDRCA 820
CR L+S V RS++ A C PP P A
Sbjct: 44 CRALASSVDRSIRLAASCFPPPEHPPPAA 72
>06_01_0964 -
7417158-7417517,7417596-7417868,7418400-7418810,
7419270-7419347
Length = 373
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +2
Query: 680 YLSAFLPSGSVALSHSSRCRYLSSGVGRSLQAG 778
Y S P SV L HSS C + S V L+AG
Sbjct: 139 YYSRLFPRQSVHLFHSSYCLHWRSQVPEGLEAG 171
>05_04_0142 - 18372751-18373338
Length = 195
Score = 28.7 bits (61), Expect = 6.3
Identities = 23/82 (28%), Positives = 32/82 (39%)
Frame = -3
Query: 781 SPSLERTTYTRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGAXQGETPGIFIV 602
S S ++Y T + R E+GG G++QGR R+A A + P
Sbjct: 37 SGSAASSSYPSTSGSAGSSSSGRRVEEEEQGGGGGGRKQGRRRKAVARAIRERLPAAVAC 96
Query: 601 LSGFATSDLSVDFCDARSGGRS 536
A V+ RSG RS
Sbjct: 97 WGNGAV----VEGIGGRSGRRS 114
>05_03_0682 -
16916437-16916686,16916761-16916822,16917082-16917147,
16917606-16917737,16917925-16918026,16918146-16918343,
16918409-16918555,16918804-16918914,16919661-16920194,
16920269-16920425,16920511-16920660,16920744-16920883,
16921668-16921784,16922759-16922932,16923020-16923187,
16923323-16923464,16923610-16923728,16924997-16925098,
16925618-16925701,16926843-16927142
Length = 1084
Score = 28.7 bits (61), Expect = 6.3
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +3
Query: 528 FHRLRPPERASQKSTLKSEVAKPDRTIKIPGVSPWXAPSCALLFRPCR 671
++ R E S + T+K E+ DRT K P + PW CAL PCR
Sbjct: 495 YYNPRESEPNSWEDTMKDEL---DRT-KYPRM-PWHDVQCALYGPPCR 537
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 6.3
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +1
Query: 349 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 504
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>11_06_0012 + 19251085-19251666
Length = 193
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 766 RTTYTRTEIPTA*AMRKRHASRREKGGQVSGK 671
RTT T E A R+RH RR+ GG G+
Sbjct: 69 RTTATAVEAQQA-LRRRRHGGRRDSGGGAGGR 99
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +1
Query: 298 NESAN---ARGEAVCVLGALPLPRSLTRCAR 381
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>06_01_0196 +
1520015-1520191,1520483-1520527,1521851-1521910,
1522246-1522358,1522432-1522642,1523087-1523133,
1523211-1523369,1523521-1523624,1524300-1524634
Length = 416
Score = 28.3 bits (60), Expect = 8.3
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +2
Query: 653 PVPTLPLTGYLSAFLPSGSVALSHSSRCRY---LSSGVGRSLQAGAVCTNPP 799
P+P P +GYLS LPS +A++ +S G A AVC P
Sbjct: 249 PIPKFPPSGYLSQPLPS-LIAIAREQGLNLSSEVSDGFDEGADACAVCLERP 299
>03_02_0532 +
9255634-9257034,9257234-9257347,9257975-9258239,
9258346-9258461
Length = 631
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +2
Query: 626 PLXSSLVRSPVPTLPLTGYLSAFLPSGSVALSHSSRCRYLSSGVGR-SLQAGAVCTNP 796
P +++ P+P G+ ++PS + A HS R SS SL A+ NP
Sbjct: 15 PYAAAVASDPLPD-DSHGHSFTYVPSSAAAFDHSPRSAAASSETSYFSLSGAAISANP 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,737,894
Number of Sequences: 37544
Number of extensions: 497403
Number of successful extensions: 1485
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1484
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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