Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_J09
         (875 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal prot...   112   4e-25
Z49909-3|CAA90107.2|  603|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr...    29   5.8  
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ...    29   5.8  

>U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 21 protein.
          Length = 88

 Score =  112 bits (269), Expect = 4e-25
 Identities = 52/83 (62%), Positives = 64/83 (77%), Gaps = 1/83 (1%)
 Frame = +2

Query: 95  MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGR-AADTSKMYVVCGAI 271
           MQNDAG+ V+LY PRKCS+SNR+I  KDHASVQ+   DVDP TGR     S  Y +CGAI
Sbjct: 1   MQNDAGQTVELYVPRKCSSSNRIIGPKDHASVQIDFVDVDPETGRMIPGKSTRYAICGAI 60

Query: 272 RRMGESDDCIVRLTKKDGILAKN 340
           RRMGESDD I+RL +KDG++ ++
Sbjct: 61  RRMGESDDAILRLAQKDGLVPRD 83


>Z49909-3|CAA90107.2|  603|Caenorhabditis elegans Hypothetical
           protein C14A4.3 protein.
          Length = 603

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = +2

Query: 20  LTIGNSLRFAFASCQFRVPCGRTYKMQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLV 199
           L + N L   F  C   +   RTY + N+ G  V++Y       +NR      H  +++ 
Sbjct: 398 LGMDNILSILFILCFAILSASRTYSIHNNYGSHVEIYRSLNAELTNRTNFKNFHDPIRVC 457

Query: 200 I 202
           +
Sbjct: 458 V 458


>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical
           protein F40E10.4 protein.
          Length = 1410

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/63 (22%), Positives = 27/63 (42%)
 Frame = -3

Query: 264 PQTTYILDVSAARPVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYV 85
           PQ+ +    S      GS S    C  AW   W++    E  + + +  N+ ++  +L  
Sbjct: 792 PQSAFSNLTSITHIAVGSNSLYCDCNMAWFSKWIKSKFIEAGIARCEYPNTVSNQLLLTA 851

Query: 84  RPH 76
           +P+
Sbjct: 852 QPY 854


>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
           protein F40E10.4 protein.
          Length = 1410

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/63 (22%), Positives = 27/63 (42%)
 Frame = -3

Query: 264 PQTTYILDVSAARPVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYV 85
           PQ+ +    S      GS S    C  AW   W++    E  + + +  N+ ++  +L  
Sbjct: 792 PQSAFSNLTSITHIAVGSNSLYCDCNMAWFSKWIKSKFIEAGIARCEYPNTVSNQLLLTA 851

Query: 84  RPH 76
           +P+
Sbjct: 852 QPY 854


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,197,347
Number of Sequences: 27780
Number of extensions: 232892
Number of successful extensions: 547
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)