Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_J07
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...   111   9e-26
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    28   1.5  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    27   3.4  
SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb...    27   4.5  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    26   6.0  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score =  111 bits (268), Expect = 9e-26
 Identities = 52/93 (55%), Positives = 64/93 (68%)
 Frame = +2

Query: 146 IPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHT 325
           +PN HFHKDWQR+VKTWFNQP R+ RR+Q R               +RP V+ PT+RY+ 
Sbjct: 9   LPNAHFHKDWQRYVKTWFNQPGRKLRRRQAR-QTKAAKIAPRPVEAIRPAVKPPTIRYNM 67

Query: 326 KVRAGRGFTLREIRAAGLNPVFARTIGIAVDPR 424
           KVRAGRGFTL E++AAG++   A TIGI VD R
Sbjct: 68  KVRAGRGFTLEELKAAGVSRRVASTIGIPVDHR 100



 Score = 73.7 bits (173), Expect = 3e-14
 Identities = 45/103 (43%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
 Frame = +3

Query: 426 RRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPA 602
           RRN+S ESLQ NV+RIK Y A LI+FP K  +  KG+A +      T +   ++P+ Q A
Sbjct: 101 RRNRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDATDVSGAEQTDV-AAVLPITQEA 159

Query: 603 PKSVARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDAAE 731
            +  A+PITE+ KNF A+  L   R+ A+  G RA   K  AE
Sbjct: 160 VEE-AKPITEEAKNFNAFSTLSNERAYARYAGARAAFQKKRAE 201


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = -1

Query: 358  TKSESSTGAYFSM----VPNSWASHYRT*RPSCRTWSYGLSFLY 239
            T   +STG+Y  M    +   W S   T    C TWSY  S+ Y
Sbjct: 1215 TVQGTSTGSYICMPHFQIQYDWCSAGVTDMSECNTWSYQKSYDY 1258


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 642 NFKAYQYLRGARSIAKLVGIRAKRLKDAAENRMML 746
           N ++ ++LR A S A++VG   +R++   EN   L
Sbjct: 843 NNRSEEFLRNAASQAEIVGANKERIQKTVENGSQL 877


>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 346 IHSS*N*GRRIEPSICPNDWNCCRSPLDATSLLNHCKSMFKE 471
           +H S N G  ++P +  N WN     +D + +LN+ K++ +E
Sbjct: 22  VHGSYN-GLGLKPQMGWNSWNKYACDIDESIILNNAKAIKEE 62


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 525 KGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDE 638
           + E N ++ +  TQ +    PV++  PK  + P+T  E
Sbjct: 470 RDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTFSE 507


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,146,536
Number of Sequences: 5004
Number of extensions: 64968
Number of successful extensions: 183
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)