Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_J06
(878 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 31 0.82
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 31 0.82
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.4
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.4
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 1.9
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 1.9
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 1.9
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.5
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.5
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 30 2.5
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.5
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 29 3.3
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 29 5.8
Z75549-6|CAC42343.1| 74|Caenorhabditis elegans Hypothetical pr... 28 7.7
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 28 7.7
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 28 7.7
AF101312-1|AAC69221.3| 813|Caenorhabditis elegans Hypothetical ... 28 7.7
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 28 7.7
AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical ... 28 7.7
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 31.5 bits (68), Expect = 0.82
Identities = 25/94 (26%), Positives = 29/94 (30%), Gaps = 2/94 (2%)
Frame = +2
Query: 305 PXKIPXPXXPQXPPPXPPP--XXGXXXXPXXVXPPXFXXXPXKFFXXXXXGGXPAXKTXG 478
P P P P P PPP G P + PP P + G P G
Sbjct: 118 PQHFPFPGMPPMPSGPPPPSMAYGMPPMPSGMMPP--RGMPGAY---PPPRGYPPAPAPG 172
Query: 479 XXLXPXGXPNGPXXXXXPXVXXXHXXPXXPPPXG 580
+ P G P P + H P PP G
Sbjct: 173 VYMPPPGMPGA---YPPPRMPIGHGPPGGPPMPG 203
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 31.5 bits (68), Expect = 0.82
Identities = 25/94 (26%), Positives = 29/94 (30%), Gaps = 2/94 (2%)
Frame = +2
Query: 305 PXKIPXPXXPQXPPPXPPP--XXGXXXXPXXVXPPXFXXXPXKFFXXXXXGGXPAXKTXG 478
P P P P P PPP G P + PP P + G P G
Sbjct: 118 PQHFPFPGMPPMPSGPPPPSMAYGMPPMPSGMMPP--RGMPGAY---PPPRGYPPAPAPG 172
Query: 479 XXLXPXGXPNGPXXXXXPXVXXXHXXPXXPPPXG 580
+ P G P P + H P PP G
Sbjct: 173 VYMPPPGMPGA---YPPPRMPIGHGPPGGPPMPG 203
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.7 bits (66), Expect = 1.4
Identities = 30/109 (27%), Positives = 31/109 (28%)
Frame = +2
Query: 305 PXKIPXPXXPQXPPPXPPPXXGXXXXPXXVXPPXFXXXPXKFFXXXXXGGXPAXKTXGXX 484
P P P PPP PPP G P + P P F GG P G
Sbjct: 285 PRPPPPPSSGMWPPP-PPPPPGRTPGPPGM-PGMPPPPPPSRFGPPGMGGMPPPPPPGMR 342
Query: 485 LXPXGXPNGPXXXXXPXVXXXHXXPXXPPPXGDTLXPXXXXXXXXXGPP 631
P G P P P P PPP P PP
Sbjct: 343 -YPGGMP-PPPPPRYPSAGPGMYPP--PPPSRPPAPPSGHGMIPPPPPP 387
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.7 bits (66), Expect = 1.4
Identities = 30/109 (27%), Positives = 31/109 (28%)
Frame = +2
Query: 305 PXKIPXPXXPQXPPPXPPPXXGXXXXPXXVXPPXFXXXPXKFFXXXXXGGXPAXKTXGXX 484
P P P PPP PPP G P + P P F GG P G
Sbjct: 295 PRPPPPPSSGMWPPP-PPPPPGRTPGPPGM-PGMPPPPPPSRFGPPGMGGMPPPPPPGMR 352
Query: 485 LXPXGXPNGPXXXXXPXVXXXHXXPXXPPPXGDTLXPXXXXXXXXXGPP 631
P G P P P P PPP P PP
Sbjct: 353 -YPGGMP-PPPPPRYPSAGPGMYPP--PPPSRPPAPPSGHGMIPPPPPP 397
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/83 (26%), Positives = 23/83 (27%)
Frame = +2
Query: 332 PQXPPPXPPPXXGXXXXPXXVXPPXFXXXPXKFFXXXXXGGXPAXKTXGXXLXPXGXPNG 511
P PP PPP G PP G P +T P G P
Sbjct: 233 PAGSPPPPPPPKGSPPLAGSGSPPP----------PPAAGSPPPPRTGSPPPPPTGSPPP 282
Query: 512 PXXXXXPXVXXXHXXPXXPPPXG 580
P P P PPP G
Sbjct: 283 PPAGGSPPPPRAGSPPPPPPPRG 305
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/83 (26%), Positives = 23/83 (27%)
Frame = +2
Query: 332 PQXPPPXPPPXXGXXXXPXXVXPPXFXXXPXKFFXXXXXGGXPAXKTXGXXLXPXGXPNG 511
P PP PPP G PP G P +T P G P
Sbjct: 254 PAGSPPPPPPPKGSPPLAGSGSPPP----------PPAAGSPPPPRTGSPPPPPTGSPPP 303
Query: 512 PXXXXXPXVXXXHXXPXXPPPXG 580
P P P PPP G
Sbjct: 304 PPAGGSPPPPRAGSPPPPPPPRG 326
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/83 (26%), Positives = 23/83 (27%)
Frame = +2
Query: 332 PQXPPPXPPPXXGXXXXPXXVXPPXFXXXPXKFFXXXXXGGXPAXKTXGXXLXPXGXPNG 511
P PP PPP G PP G P +T P G P
Sbjct: 239 PAGSPPPPPPPKGSPPLAGSGSPPP----------PPAAGSPPPPRTGSPPPPPTGSPPP 288
Query: 512 PXXXXXPXVXXXHXXPXXPPPXG 580
P P P PPP G
Sbjct: 289 PPAGGSPPPPRAGSPPPPPPPRG 311
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +2
Query: 305 PXKIPXPXXPQXPPPXPPPXXGXXXXPXXVXPP 403
P P P PPP PPP G P PP
Sbjct: 758 PPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +2
Query: 305 PXKIPXPXXPQXPPPXPPPXXGXXXXPXXVXPP 403
P P P PPP PPP G P PP
Sbjct: 758 PPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 29.9 bits (64), Expect = 2.5
Identities = 24/88 (27%), Positives = 24/88 (27%)
Frame = +2
Query: 317 PXPXXPQXPPPXPPPXXGXXXXPXXVXPPXFXXXPXKFFXXXXXGGXPAXKTXGXXLXPX 496
P P PPP G P PP P F G P G P
Sbjct: 359 PSPQSFGGPPPPVSSAPGNFAPPPQSGPPGAFAPPPSAFGAPQGPGGPG----GYGPPPP 414
Query: 497 GXPNGPXXXXXPXVXXXHXXPXXPPPXG 580
G P P P P PPP G
Sbjct: 415 GGPGAPGSYGPPQGGPGGFGP--PPPGG 440
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +2
Query: 305 PXKIPXPXXPQXPPPXPPPXXGXXXXPXXVXPP 403
P P P PPP PPP G P PP
Sbjct: 341 PPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 373
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 29.5 bits (63), Expect = 3.3
Identities = 25/86 (29%), Positives = 25/86 (29%)
Frame = -3
Query: 573 GGGXXGXXCXXXTWGIXXXXGPLGXPXGXKXXPXVFXAGXPPXFXXXKNFXGXXXKXGGX 394
GGG G C G G G G P PP G GG
Sbjct: 24 GGGGGGGGCGGGCGGGGGCGGGGGCGGGCAPPPP------PPACGGGCGGGGGGCGGGGG 77
Query: 393 TXXGXXXXPXXGGGXGGGXWGXXGXG 316
G GGG GGG G G G
Sbjct: 78 GCGGGGGCGGGGGGCGGGGGGCGGGG 103
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +2
Query: 341 PPPXPPPXXGXXXXPXXVXPPXFXXXP 421
PPP PPP G P PP + P
Sbjct: 40 PPPPPPPCGGGYEAPPPPPPPSYAGGP 66
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = -3
Query: 426 FXGXXXKXGGXTXXGXXXXPXXGGGXGGGXWGXXGXGIFXG 304
+ G GG G GGG GGG +G G G + G
Sbjct: 99 YGGGGDFGGGMGGGGYGGGGYGGGGDGGGGYGGYGGGGYGG 139
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -3
Query: 402 GGXTXXGXXXXPXXGGGXGGGXWGXXGXGIFXG 304
GG G GGG GGG +G G G + G
Sbjct: 153 GGGGGGGGDFGGYGGGGMGGGGYGGGGDGGYGG 185
>Z75549-6|CAC42343.1| 74|Caenorhabditis elegans Hypothetical
protein T19C4.7 protein.
Length = 74
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = -3
Query: 402 GGXTXXGXXXXPXXGGGXGGGXWGXXGXGIFXG 304
GG G GG GGG WG G G + G
Sbjct: 38 GGPWGYGGGWRRRHWGGYGGGPWGGYGGGPWGG 70
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 305 PXKIPXPXXPQXPPPXPPP 361
P P PQ PPP PPP
Sbjct: 15 PESAPAATTPQPPPPPPPP 33
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = +2
Query: 317 PXPXXPQXPPPXPPPXXGXXXXPXXVXPPXFXXXPXKFF 433
P P P PPP PPP P P P F
Sbjct: 58 PPPMCPPPPPPPPPPMCPPPPPPMPSYSPCQSYAPAPVF 96
>AF101312-1|AAC69221.3| 813|Caenorhabditis elegans Hypothetical
protein F56E10.2 protein.
Length = 813
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 305 PXKIPXPXXPQXPPPXPPPXXGXXXXP 385
P +P P P PPP PPP G P
Sbjct: 320 PPLLP-PVCPPAPPPPPPPIGGLTSPP 345
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +2
Query: 323 PXXPQXPPPXPPPXXGXXXXPXXVXPP 403
P P PPP PPP P PP
Sbjct: 1336 PSPPPPPPPPPPPSDDLTPVPPPPPPP 1362
>AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical
protein W08E12.6 protein.
Length = 215
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +3
Query: 168 PFFXPPXPXLGXXPXTPXXXKXGXPXPXLKXPXPXP 275
PFF PP P G P G P P P P P
Sbjct: 18 PFFLPPPPCFGIGCNQPPIVIAG-PPPCFDCPPPAP 52
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,247,956
Number of Sequences: 27780
Number of extensions: 166030
Number of successful extensions: 1523
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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