Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_J05
(895 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 198 1e-51
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 112 6e-26
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 108 1e-24
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 102 6e-23
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 28 1.6
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 4.8
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po... 26 6.3
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo... 26 6.3
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 26 8.3
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ... 26 8.3
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 198 bits (482), Expect = 1e-51
Identities = 87/123 (70%), Positives = 104/123 (84%)
Frame = +1
Query: 151 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 330
MREIVH+QAGQCGNQ+GA FW I++EHG+D G+Y GTS+ Q ER++VY+NEA+
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAA----- 55
Query: 331 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 510
GGKYVPRA+L+DLEPGTMDAV+SG +G LFRPDN ++GQSGAGN WAKGHYTEGAEL D
Sbjct: 56 -GGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELAD 114
Query: 511 AVL 519
AVL
Sbjct: 115 AVL 117
Score = 137 bits (331), Expect = 2e-33
Identities = 67/117 (57%), Positives = 78/117 (66%)
Frame = +3
Query: 534 RSVRTAIASRGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVE 713
R A +GFQ KIREEYPDR+M T+SV P+PK SDTVVE
Sbjct: 122 REAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVE 181
Query: 714 PYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKVPNPTYGDLNHLVSLTMSGVTT 884
PYNA LS+HQLVEN+DET+CIDNEAL I TLK+ +P+Y DLNHLVS M+GVTT
Sbjct: 182 PYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTT 238
Score = 29.5 bits (63), Expect = 0.67
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2
Query: 518 LDVVRKECENCDCLQG 565
LDVVR+E E CD LQG
Sbjct: 117 LDVVRREAEACDALQG 132
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 112 bits (270), Expect = 6e-26
Identities = 55/125 (44%), Positives = 79/125 (63%), Gaps = 2/125 (1%)
Frame = +1
Query: 151 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEA-SVATA 327
MRE++ + GQ G QIG WE+ EHGI P G T + ++ + + Y N+ +
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGF--PTENSEVHKNNSYLNDGFGTFFS 58
Query: 328 ESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 504
E+G GK+VPR+I +DLEP +D VR+G Y LF P+ V G+ A NN+A+GHYT G E+
Sbjct: 59 ETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEM 118
Query: 505 VDAVL 519
+D+VL
Sbjct: 119 IDSVL 123
Score = 88.6 bits (210), Expect = 1e-18
Identities = 38/84 (45%), Positives = 58/84 (69%)
Frame = +3
Query: 630 KIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYR 809
++ EY + +SV P+P+VS +VVEPYN+VL+ H ++N+D T+ +DNEA YDIC R
Sbjct: 160 RLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRR 219
Query: 810 TLKVPNPTYGDLNHLVSLTMSGVT 881
L + PTY +LN L++ +S +T
Sbjct: 220 NLDIERPTYENLNRLIAQVVSSIT 243
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 108 bits (259), Expect = 1e-24
Identities = 55/124 (44%), Positives = 71/124 (57%), Gaps = 2/124 (1%)
Frame = +1
Query: 151 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLER--ISVYYNEASVAT 324
MREI+ + GQ G QIG WE+ EHGI P G + Q S +++E
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQ-- 58
Query: 325 AESGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 504
GKYVPR+I +DLEP +D VR+G Y LF P+ + G+ A NN+A+GHYT G EL
Sbjct: 59 ----GKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKEL 114
Query: 505 VDAV 516
VD V
Sbjct: 115 VDEV 118
Score = 82.2 bits (194), Expect = 9e-17
Identities = 35/84 (41%), Positives = 56/84 (66%)
Frame = +3
Query: 630 KIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYR 809
++ EY + +SV P+P+VS +VVEPYN+VL+ H ++ D T+ +DNE+ YDIC R
Sbjct: 156 RLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRR 215
Query: 810 TLKVPNPTYGDLNHLVSLTMSGVT 881
L + P+Y +LN L++ +S +T
Sbjct: 216 NLDIERPSYENLNRLIAQVVSSIT 239
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 102 bits (245), Expect = 6e-23
Identities = 48/112 (42%), Positives = 72/112 (64%), Gaps = 2/112 (1%)
Frame = +1
Query: 154 REIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAES 333
REI+ LQAGQCGNQIG++FW+ + EHGI P G + ++R V++ ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQS------D 56
Query: 334 GGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQS--GAGNNWAKGH 483
+Y+PRAIL+DLEP ++ + S YG L+ P+N + ++ GAGNNWA G+
Sbjct: 57 DTRYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANGY 108
Score = 75.8 bits (178), Expect = 8e-15
Identities = 38/86 (44%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Frame = +3
Query: 630 KIREEYPDRIMNTYSVVP-SPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICY 806
++ + YP +I+ TYSV P S VSD VV+PYN++L++ +L N D +DN AL I
Sbjct: 156 RLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAA 215
Query: 807 RTLKVPNPTYGDLNHLVSLTMSGVTT 884
L NPT+ N LVS MS TT
Sbjct: 216 DRLHTQNPTFHQQNQLVSTVMSASTT 241
>SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1021
Score = 28.3 bits (60), Expect = 1.6
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Frame = +3
Query: 672 SVVPSPKVSDTVVE------PYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKVP 824
S+ P+P+ DTV+ PYNA+ +Q V+ T + A I Y K+P
Sbjct: 924 SLTPNPQQQDTVINAVPTFAPYNAMTKFNQKVKVMPGTGKVGKAARESIAYFMKKLP 980
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +1
Query: 190 NQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERI 291
N++G E+++E+ +DPT + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 622
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 262 GTSDLQLERISVYYNEASVATAESGGKYVPRAILLDLE 375
G+SD+ + +S + EAS + S VP+ +L D +
Sbjct: 49 GSSDVTMTSVSGHLTEASFPSEYSSWSSVPQDVLFDAQ 86
>SPAPB17E12.10c |||SAM-dependent
methyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -2
Query: 576 SVGIPWRQSQFSHSLRTTSKDGVDELSALRVVS-LGP 469
S IP+ QS F T K +++LSA ++S LGP
Sbjct: 153 SASIPYLQSVFEEERDTKEKAKIEDLSADVIMSDLGP 189
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +3
Query: 756 TDETYCIDNEALYDICYRTLKVPNPTYGDLNHLVS 860
T Y + E YDIC L T LNHL+S
Sbjct: 256 TSFLYALAGELDYDICVLNLAEKGLTDDRLNHLLS 290
>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 965
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 719 QRSSLHPSTSREYRRNLLHRQRG 787
Q SSLHPS+SR + + H RG
Sbjct: 201 QLSSLHPSSSRRHLISTPHVNRG 223
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,997,474
Number of Sequences: 5004
Number of extensions: 56453
Number of successful extensions: 198
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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