Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_J04
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy...    31   0.16 
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    26   6.0  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   6.0  
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    26   7.9  
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    26   7.9  
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    26   7.9  
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    26   7.9  

>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 357

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +2

Query: 599 GGCWNKMECFNKAPTILSSEKSLVRCYETRI*QNMEFRIIL 721
           GG WN ++  N+ P  ++  ++L+R YET +   +   ++L
Sbjct: 81  GGVWNGIDRANETPGCIARRRNLLRLYETIVDAGVRSELLL 121


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 298 VQSFSYDRDHHHYKTKLR 245
           VQS  +D +HH+YKT  R
Sbjct: 867 VQSRWHDEEHHYYKTGFR 884


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = +1

Query: 124 ICP-IIQIILATTNLLVRKISTIISNPLKHKNNKNYIKKTMNEVLFYSDDDPDHMRMIGL 300
           ICP I++ +LA    LVR+   + S+ +K  N+       +      S+++P H +    
Sbjct: 115 ICPCILKALLA----LVRQHRELSSDIVKFLNSIFLALTRILNTPHSSNNNPTHTKTTIF 170

Query: 301 GNIFCIYYVIFKSKRTIDVCVPRLSSDA 384
             +F   ++ F  +   D C+  L  DA
Sbjct: 171 EKVFYASHLGFFFEEIADACISALPQDA 198


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -3

Query: 612 FQHPP--QQTFPSKIMAFGSEESITINSCSRRTSDFISFTSILFRVN 478
           F+ PP  Q+   S    +G   S+TINS +  T  F S  S    +N
Sbjct: 169 FEGPPLSQERLYSIFRTYGKLRSVTINSPTSATLSFSSLRSATSALN 215


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = +1

Query: 217 NKNYIKKTMNEVLFYSDDDPD 279
           +KNYIKK++ E+++ ++  P+
Sbjct: 123 SKNYIKKSLQEIVYLTNMQPN 143


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 380 MR*LSALFKVQQQNGSKTRIIIHKSNDLRNLQL-FTLNRIEVKLIKSE 520
           M+ L  LFK Q  +GSK  II    +DLR  QL   +  +  KL+K E
Sbjct: 526 MQPLRLLFKCQ--DGSKYPIIFKNGDDLRQDQLVIQILTLMDKLLKKE 571


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
 Frame = +1

Query: 286 RMIGLGNIFCIYYVIFK----SKRTIDVC-VPRL---SSDALAKCLV*STTAKWIENKNH 441
           R+   GN F IY++IF+    S +T   C  P L   S D   + LV       I  K+ 
Sbjct: 5   RLSAFGNAFLIYFIIFRLCCCSPQTSHWCKYPALCLKSPDTHNENLVCDAYLSVIATKSE 64

Query: 442 NPQEQRPTKFTIVYSKQNRSETYKIRSS 525
             +   PT +    + + +  ++  ++S
Sbjct: 65  EKEASNPTTWDFTPTNKYQEPSFHTKTS 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,096,867
Number of Sequences: 5004
Number of extensions: 63370
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)