Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_J04
         (860 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025465-3|AAB71027.2|  380|Caenorhabditis elegans Hypothetical ...    31   1.4  
Z83234-2|CAB70170.2|  715|Caenorhabditis elegans Hypothetical pr...    30   2.4  
AF125963-1|AAD14742.1|  339|Caenorhabditis elegans Serpentine re...    30   2.4  
AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain, ...    30   2.4  
Z50874-6|CAA90765.1|  759|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z80223-4|CAB02318.1|  229|Caenorhabditis elegans Hypothetical pr...    29   5.6  
Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AF399825-1|AAK77200.1| 1262|Caenorhabditis elegans separase prot...    28   7.4  
AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively...    28   7.4  
AC024791-1|AAF60651.1| 1262|Caenorhabditis elegans Separase prot...    28   7.4  

>AF025465-3|AAB71027.2|  380|Caenorhabditis elegans Hypothetical
           protein K02E7.6 protein.
          Length = 380

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 214 NNKNYIKKTMNEVLFYSDDDPDHMRMIGLGNIFCIYYV 327
           N KNY+K+   E  F  D+D     + G   IF  YY+
Sbjct: 327 NLKNYVKRIQGEGTFDKDEDMADALLKGFETIFTKYYI 364


>Z83234-2|CAB70170.2|  715|Caenorhabditis elegans Hypothetical
           protein K09E4.4 protein.
          Length = 715

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -3

Query: 540 NSCSRRTSDFISFTS--ILFRVNNCKFRRSLLLW 445
           + C +RTSDFI+F S  I +  N C F  S   W
Sbjct: 118 SGCRKRTSDFINFESKQIRYFGNMCTFSYSFAWW 151


>AF125963-1|AAD14742.1|  339|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 20 protein.
          Length = 339

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 172 RKISTIISNPLKHKNNKNYIKKTMNEVLFYSDDDPDH 282
           RK+ +II NP K  + + + + T N  +FYS D P H
Sbjct: 295 RKVKSIIRNPFKILS-RPHERATSNSGVFYSRDHPIH 330


>AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 7 protein.
          Length = 1887

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 24/106 (22%), Positives = 45/106 (42%)
 Frame = +1

Query: 97   F*FTIAETMICPIIQIILATTNLLVRKISTIISNPLKHKNNKNYIKKTMNEVLFYSDDDP 276
            F  T  +  I P   ++ +T +L  R+ S  I N  +H N  N  + T+ + +F      
Sbjct: 1330 FSLTKTKQQIDPGNMLVESTDDL--RQFSIFIFNKTRHLNESNAKRDTVVDAVFKKSLRA 1387

Query: 277  DHMRMIGLGNIFCIYYVIFKSKRTIDVCVPRLSSDALAKCLV*STT 414
             HM ++G   +  +   + K +  I +    L+   L + +   TT
Sbjct: 1388 FHMELLGYEAVLSVEQSVLKYRDVITMFEGLLTKVCLEESVSFPTT 1433


>Z50874-6|CAA90765.1|  759|Caenorhabditis elegans Hypothetical
           protein R10E4.4 protein.
          Length = 759

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -3

Query: 384 RITGQSRDAYINGSL*FKNHIINAENITQSNHSHMIGIIITIKQ 253
           R+T Q+ +  +N  +  +N ++NA+       +H   I IT++Q
Sbjct: 593 RLTPQASEKLVNHYVKMRNPVVNADAFKSGKKAHNSAIPITVRQ 636


>Z80223-4|CAB02318.1|  229|Caenorhabditis elegans Hypothetical
           protein F26D10.11 protein.
          Length = 229

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 489 FRVNNCKFRRSLLLWIMILVFDPFCCCTLNKALS 388
           +++  C+ R   LL  M+LVFD  C C L  AL+
Sbjct: 149 YQLGLCQIRWPYLL-AMVLVFDQLCLCCLGFALA 181


>Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical
           protein ZC504.4d protein.
          Length = 1072

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 672 LTKDFSEDNIVGALLKHSILFQHPPQQTFPSKI 574
           L KD+ +    GALL+H  + + P +QT    I
Sbjct: 269 LVKDYHQRPYTGALLRHPFIKEQPHEQTIRHSI 301


>Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical
           protein ZC504.4c protein.
          Length = 1096

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 672 LTKDFSEDNIVGALLKHSILFQHPPQQTFPSKI 574
           L KD+ +    GALL+H  + + P +QT    I
Sbjct: 269 LVKDYHQRPYTGALLRHPFIKEQPHEQTIRHSI 301


>Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical
           protein ZC504.4b protein.
          Length = 1082

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 672 LTKDFSEDNIVGALLKHSILFQHPPQQTFPSKI 574
           L KD+ +    GALL+H  + + P +QT    I
Sbjct: 269 LVKDYHQRPYTGALLRHPFIKEQPHEQTIRHSI 301


>Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical
           protein ZC504.4a protein.
          Length = 1087

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 672 LTKDFSEDNIVGALLKHSILFQHPPQQTFPSKI 574
           L KD+ +    GALL+H  + + P +QT    I
Sbjct: 269 LVKDYHQRPYTGALLRHPFIKEQPHEQTIRHSI 301


>AF399825-1|AAK77200.1| 1262|Caenorhabditis elegans separase
           protein.
          Length = 1262

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -3

Query: 633 LLKHSILFQHPPQQTFPSKIMAFGSEESITINSCSRRTSD--FISFTSILFR 484
           L K  +L     +  + SK+M   S E++ +  C  RT+D  F SF  ++ R
Sbjct: 833 LSKGGLLLGEAKEMVYQSKLMDAKSWEALILRFCEMRTTDEKFKSFLPLMHR 884


>AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively
           spliced serine/threonineprotein kinase MIG-15 protein.
          Length = 1087

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 672 LTKDFSEDNIVGALLKHSILFQHPPQQTFPSKI 574
           L KD+ +    GALL+H  + + P +QT    I
Sbjct: 269 LVKDYHQRPYTGALLRHPFIKEQPHEQTIRHSI 301


>AC024791-1|AAF60651.1| 1262|Caenorhabditis elegans Separase protein
           1 protein.
          Length = 1262

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -3

Query: 633 LLKHSILFQHPPQQTFPSKIMAFGSEESITINSCSRRTSD--FISFTSILFR 484
           L K  +L     +  + SK+M   S E++ +  C  RT+D  F SF  ++ R
Sbjct: 833 LSKGGLLLGEAKEMVYQSKLMDAKSWEALILRFCEMRTTDEKFKSFLPLMHR 884


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,758,030
Number of Sequences: 27780
Number of extensions: 342884
Number of successful extensions: 809
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)