Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_J04
         (860 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    23   2.7  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    23   2.7  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    23   2.7  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    23   2.7  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   2.7  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   2.7  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    23   2.7  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   6.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   8.4  

>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 175 KISTIISNPLKHKNNKNYIK 234
           KI + +SN   H NN NY K
Sbjct: 80  KIISSLSNKTIHNNNNNYKK 99


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 175 KISTIISNPLKHKNNKNYIK 234
           KI + +SN   H NN NY K
Sbjct: 80  KIISSLSNKTIHNNNNNYKK 99


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 175 KISTIISNPLKHKNNKNYIK 234
           KI + +SN   H NN NY K
Sbjct: 80  KIISSLSNKTIHNNNNNYKK 99


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 175 KISTIISNPLKHKNNKNYIK 234
           KI + +SN   H NN NY K
Sbjct: 80  KIISSLSNKTIHNNNNNYKK 99


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 181 STIISNPLKHK-NNKNYIKKTMNEVLFYS 264
           +TI +N  K+  NN NY     N+ L+Y+
Sbjct: 87  NTIHNNNYKYNYNNNNYNNNNYNKKLYYN 115


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 181 STIISNPLKHK-NNKNYIKKTMNEVLFYS 264
           +TI +N  K+  NN NY     N+ L+Y+
Sbjct: 87  NTIHNNNYKYNYNNNNYNNNNYNKKLYYN 115


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 175 KISTIISNPLKHKNNKNYIK 234
           KI + +SN   H NN NY K
Sbjct: 313 KIISSLSNKTIHNNNNNYKK 332


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 358 IHQWFALI*KSHNKCRKYYPVQSFSYDRDHHHYKTKLRSW 239
           IH+W  L     N  R+   +QS  YDR   +Y   +  W
Sbjct: 39  IHKWKYLDYDFDNDERRQAAIQSGEYDRT-KNYPLDVDQW 77


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 639 GALLKHSILFQHPPQ 595
           G  L H IL QHP Q
Sbjct: 187 GTRLLHGILSQHPQQ 201


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,726
Number of Sequences: 438
Number of extensions: 4413
Number of successful extensions: 27
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)