Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_J02
(886 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 29 3.3
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 4.4
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 4.4
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 4.4
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 4.4
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 29.5 bits (63), Expect = 3.3
Identities = 23/85 (27%), Positives = 25/85 (29%), Gaps = 1/85 (1%)
Frame = +3
Query: 585 PXKXGGRXXNXXXPXLXXWGNXPXFXFXPXXGPXXXGGAPPQGXKT-PXXXXFXPXXGXG 761
P G + P L P P GP GAPP G P P G
Sbjct: 154 PFDPSGAPPSGGPPGLFDPSGAPPSGGPP--GPFGPSGAPPSGGPPGPFNPSEAPPSGGP 211
Query: 762 XGPXXXXKXXXGGGXXXPXSPXQXP 836
GP GG P +P P
Sbjct: 212 TGPFDPSGAPPSGGPPGPFNPSGAP 236
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/54 (31%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Frame = +3
Query: 678 GPXXXGGAPPQGXKT-PXXXXFXPXXGXGXGPXXXXKXXXGGGXXXPXSPXQXP 836
GP GAPP G P P G GP GG P +P P
Sbjct: 213 GPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAP 266
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/54 (31%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Frame = +3
Query: 678 GPXXXGGAPPQGXKT-PXXXXFXPXXGXGXGPXXXXKXXXGGGXXXPXSPXQXP 836
GP GAPP G P P G GP GG P +P P
Sbjct: 273 GPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAQPSGGPPGPFNPSGAP 326
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/54 (31%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Frame = +3
Query: 678 GPXXXGGAPPQGXKT-PXXXXFXPXXGXGXGPXXXXKXXXGGGXXXPXSPXQXP 836
GP GAPP G P P G GP GG P +P P
Sbjct: 363 GPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAP 416
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/54 (31%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Frame = +3
Query: 678 GPXXXGGAPPQGXKT-PXXXXFXPXXGXGXGPXXXXKXXXGGGXXXPXSPXQXP 836
GP GAPP G P P G GP GG P +P P
Sbjct: 378 GPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAP 431
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/54 (31%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Frame = +3
Query: 678 GPXXXGGAPPQGXKT-PXXXXFXPXXGXGXGPXXXXKXXXGGGXXXPXSPXQXP 836
GP GAPP G P P G GP GG P +P P
Sbjct: 393 GPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAP 446
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/54 (31%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Frame = +3
Query: 678 GPXXXGGAPPQGXKT-PXXXXFXPXXGXGXGPXXXXKXXXGGGXXXPXSPXQXP 836
GP GAPP G P P G GP GG P +P P
Sbjct: 408 GPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAP 461
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/54 (31%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Frame = +3
Query: 678 GPXXXGGAPPQGXKT-PXXXXFXPXXGXGXGPXXXXKXXXGGGXXXPXSPXQXP 836
GP GAPP G P P G GP GG P +P P
Sbjct: 423 GPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAP 476
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/54 (31%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Frame = +3
Query: 678 GPXXXGGAPPQGXKT-PXXXXFXPXXGXGXGPXXXXKXXXGGGXXXPXSPXQXP 836
GP GAPP G P P G GP GG P +P P
Sbjct: 453 GPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAP 506
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Frame = +3
Query: 678 GPXXXGGAPPQGXKT-PXXXXFXPXXGXGXGPXXXXKXXXGGGXXXPXSPXQXP 836
GP GAPP G P P G GP GG P P P
Sbjct: 228 GPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAP 281
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Frame = +3
Query: 678 GPXXXGGAPPQGXKT-PXXXXFXPXXGXGXGPXXXXKXXXGGGXXXPXSPXQXP 836
GP GAPP G P P G GP GG P P P
Sbjct: 243 GPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAP 296
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Frame = +3
Query: 678 GPXXXGGAPPQGXKT-PXXXXFXPXXGXGXGPXXXXKXXXGGGXXXPXSPXQXP 836
GP GAPP G P P G GP GG P P P
Sbjct: 318 GPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAP 371
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Frame = +3
Query: 678 GPXXXGGAPPQGXKT-PXXXXFXPXXGXGXGPXXXXKXXXGGGXXXPXSPXQXP 836
GP GAPP G P P G GP GG P P P
Sbjct: 333 GPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAP 386
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Frame = +3
Query: 678 GPXXXGGAPPQGXKT-PXXXXFXPXXGXGXGPXXXXKXXXGGGXXXPXSPXQXP 836
GP GAPP G P P G GP GG P P P
Sbjct: 348 GPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAP 401
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Frame = +3
Query: 678 GPXXXGGAPPQGXKT-PXXXXFXPXXGXGXGPXXXXKXXXGGGXXXPXSPXQXP 836
GP GAPP G P P G GP GG P P P
Sbjct: 438 GPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAP 491
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Frame = +3
Query: 678 GPXXXGGAPPQGXKT-PXXXXFXPXXGXGXGPXXXXKXXXGGGXXXPXSPXQXP 836
GP GAPP G P P G GP GG P P P
Sbjct: 468 GPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAP 521
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.1 bits (62), Expect = 4.4
Identities = 21/72 (29%), Positives = 21/72 (29%), Gaps = 3/72 (4%)
Frame = -1
Query: 802 PPPXXXFXXXXGPXPXPXXGXXXXXXG---VLXPXGGAPPXXXGPXXGXKXKXGXFPXXX 632
PPP GP P P G G P GG PP GP G P
Sbjct: 714 PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 773
Query: 631 NXGXXKFXXRPP 596
F PP
Sbjct: 774 PPPPGGFKGGPP 785
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.1 bits (62), Expect = 4.4
Identities = 21/72 (29%), Positives = 21/72 (29%), Gaps = 3/72 (4%)
Frame = -1
Query: 802 PPPXXXFXXXXGPXPXPXXGXXXXXXG---VLXPXGGAPPXXXGPXXGXKXKXGXFPXXX 632
PPP GP P P G G P GG PP GP G P
Sbjct: 714 PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 773
Query: 631 NXGXXKFXXRPP 596
F PP
Sbjct: 774 PPPPGGFKGGPP 785
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.1 bits (62), Expect = 4.4
Identities = 21/72 (29%), Positives = 21/72 (29%), Gaps = 3/72 (4%)
Frame = -1
Query: 802 PPPXXXFXXXXGPXPXPXXGXXXXXXG---VLXPXGGAPPXXXGPXXGXKXKXGXFPXXX 632
PPP GP P P G G P GG PP GP G P
Sbjct: 297 PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 356
Query: 631 NXGXXKFXXRPP 596
F PP
Sbjct: 357 PPPPGGFKGGPP 368
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/61 (29%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Frame = -1
Query: 856 PXKNXEKGXWXGXXGXXXPPPXXXFXXXXGPXPXPXXGXXXXXXGVLXP-XGGAPPXXXG 680
P +G W G PP G P P G G+ P GG PP G
Sbjct: 1438 PVMGGHEGSWRGGPPMRGMPPLGMMRGRGG--PPPPRGMNSPMRGMPPPMRGGGPPMRGG 1495
Query: 679 P 677
P
Sbjct: 1496 P 1496
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,838,295
Number of Sequences: 27780
Number of extensions: 121428
Number of successful extensions: 200
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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