Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_J01
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    34   0.030
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    29   0.64 
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    29   0.85 
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    28   1.5  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    27   3.4  
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    27   4.5  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   4.5  
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    27   4.5  
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    26   6.0  
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c...    26   6.0  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    26   7.9  

>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 33.9 bits (74), Expect = 0.030
 Identities = 30/123 (24%), Positives = 53/123 (43%)
 Frame = +3

Query: 96  SSSKIY*FRMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA 275
           S SK+    +A S  +  ++ D P+ +T   S L+ F+T  +    +  + VLPS  D  
Sbjct: 26  SPSKVCRDNIALSEHNVITVLDTPQRSTQCDSLLKSFSTPLV----SGSEDVLPSPRDAL 81

Query: 276 TEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 455
               +KS+ D +    +S  + T T   NP    +++    +  N L       +  + H
Sbjct: 82  NITNKKSVTDNLLLSLTSSNQSTNT-NLNPSSRVEIINLNSSPPNSLSSQPKHQEFHLFH 140

Query: 456 TTT 464
           T T
Sbjct: 141 TPT 143


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
 Frame = +3

Query: 354 EKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLXXXXXXXXXXXXNKFLN 533
           E N L +++ V  EK  Q  LD  E    +++K T      PL            N  L 
Sbjct: 412 ENNELLNENRVLKEKL-QTYLDKKESNVTSKIKSTAENSSKPLSMNEADERKDGLNNLLF 470

Query: 534 GIENFDPTK--LKHTETCEKNRSPQRTSLSKRNQLEPLL 644
             ++   TK     TET ++N SPQ+ S S  +  + L+
Sbjct: 471 ENKSGANTKEMSNGTETAKENCSPQQDSTSPTSGYQDLV 509


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +2

Query: 284 DPEVF-IRRYREV*FEPAEAHRDSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHD 460
           DPE++ +RR       P   + D+ ++      + R G        R RT+R   DEA  
Sbjct: 55  DPELYGLRRSGRTRSNPGR-YVDTDDQEDVFPSKHRKGTRNGSSFSRHRTIRDLDDEAES 113

Query: 461 DGRKESTAPDRSY 499
              +ES + D SY
Sbjct: 114 VTSEESESDDSSY 126


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
 Frame = +3

Query: 162 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSA-------EDVATEKTQKSLFDGIEKF 320
           L K +TDL +Q E FN  C +  D +  +V   A       E V  E+    + DG+E  
Sbjct: 428 LNKWSTDLTTQTEVFNKLCDQVSDWDRTLVDNGALISKLYTETVEAEQMSNRIDDGLEYV 487

Query: 321 DSSQ 332
            SSQ
Sbjct: 488 SSSQ 491


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/62 (20%), Positives = 28/62 (45%)
 Frame = +3

Query: 264 EDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKT 443
           EDV  E+ +    +  E  D  + ++ E + +N  P+       +     + G+E +D+T
Sbjct: 248 EDVDEEEEEDDDENNDEGDDEDENENDELRSENGSPNPSAAVINEQENMNMSGIEEYDET 307

Query: 444 QM 449
            +
Sbjct: 308 NL 309


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -2

Query: 280 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 149
           SV   + DG  +  +  +++RQ V+ P +  F +   +GR F+E
Sbjct: 86  SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +2

Query: 419 RSRTLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRE 544
           R+   +    ++HD G   S + DR     + K++   +HRE
Sbjct: 710 RTERKKDTQKQSHDHGHSHSKSHDREKEKEKKKDREHRKHRE 751


>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
 Frame = +3

Query: 147 PSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGI----E 314
           P  K L K+  +L+S L+    SCL+D  T+ K ++       +EKTQ+ +FD +    +
Sbjct: 14  PGNKCLAKL-NELESILKDAKKSCLKDPTTSMKELV-----ACSEKTQQ-VFDDLKRTEK 66

Query: 315 KFDSSQLKHTETQEK 359
           KF +S  +  +T EK
Sbjct: 67  KFHTSLNRFGKTLEK 81


>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 287 GLLSGNVFSRRKHNLFIGVDVTETAGVEAFELTLQ 183
           G ++G  +S    +LFIGVD     G+  F   LQ
Sbjct: 385 GEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419


>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 22/71 (30%), Positives = 34/71 (47%)
 Frame = +3

Query: 231 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQN 410
           D  EK V  S +    E+ QK++ D  E+ D   +  T T  K+      +   EK HQ 
Sbjct: 131 DATEKFVTSSYKK-HREEVQKAIEDRKEE-DEKSITDTTTGMKDFYASM-LDRQEKIHQA 187

Query: 411 LLDGVEHFDKT 443
            ++GV++  KT
Sbjct: 188 AVEGVQNSKKT 198


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/43 (23%), Positives = 23/43 (53%)
 Frame = +3

Query: 246 IVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPD 374
           + L S ED+ +  T+ S+   + +    +++HT  + K  +P+
Sbjct: 134 VALKSEEDIPSSVTRLSVVKLVNRVTYERMRHTMLEFKRSIPE 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,168,220
Number of Sequences: 5004
Number of extensions: 62344
Number of successful extensions: 258
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)