BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_J01
(860 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1016 + 13228113-13228964 33 0.29
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 33 0.39
09_02_0057 - 3697255-3698116,3698191-3698351,3698442-3698636,369... 32 0.68
02_03_0172 + 15965342-15965711,15967757-15967849,15967976-159680... 32 0.68
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809... 31 0.89
01_01_0012 + 71903-72935,73468-73981,74619-76008 31 0.89
06_02_0203 + 12986685-12988691 30 2.1
11_06_0198 - 21158350-21159528 30 2.7
08_01_0434 + 3809681-3810016,3810039-3811100 30 2.7
07_03_1577 - 27869596-27869682,27869769-27869869,27869956-278699... 30 2.7
11_06_0021 + 19314211-19314311,19315202-19315307,19317135-193174... 29 3.6
09_04_0377 + 17086775-17088310 29 3.6
09_04_0329 + 16726501-16726750,16726843-16726930,16727280-167273... 29 3.6
05_07_0354 - 29507068-29507170,29507406-29507431,29508264-295083... 29 3.6
11_06_0184 - 21006659-21009823 29 4.8
07_03_0735 + 21075033-21075846,21077065-21077199,21077384-210775... 29 4.8
03_05_0868 + 28385066-28385478,28386050-28386167,28386365-283867... 29 4.8
03_02_0985 - 12961787-12961984,12963177-12963337,12965332-129654... 29 4.8
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 29 4.8
04_04_0411 - 25014511-25015015,25015098-25015169,25015700-250157... 29 6.3
01_06_1402 + 37052996-37053449,37053533-37053630,37053718-370538... 29 6.3
01_06_0241 - 27813076-27813622,27813695-27814125 29 6.3
12_01_0906 + 8799284-8799441,8800865-8801690,8801933-8802055,880... 28 8.3
12_01_0433 - 3402250-3402536,3402644-3403030,3403523-3403957,340... 28 8.3
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172... 28 8.3
06_03_0723 + 23875008-23875204,23875311-23875576,23877166-238772... 28 8.3
04_04_0057 + 22410167-22411330 28 8.3
>03_02_1016 + 13228113-13228964
Length = 283
Score = 33.1 bits (72), Expect = 0.29
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +2
Query: 326 EPAEAHRDSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHD 460
E A AH +G + A+ RRC SG P P RS T HD
Sbjct: 214 EAARAHASNGGKHAAA-RRCSSGNHQPVPRARSTTGMDSLGHGHD 257
>09_04_0087 +
14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 32.7 bits (71), Expect = 0.39
Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 3/103 (2%)
Frame = +2
Query: 326 EPAEAHRDSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRS 505
E E H ++GE+ +C P + + + + A ++E T D
Sbjct: 149 ENGEKHEENGEKQNENGEKCEENGGKPAQISDDQAVNGCNGSADKKDKEEETEKDNEKEK 208
Query: 506 GEGKEQIP---ERHRELRSH*AEAHGDVRKEPLPTKDVIEQEK 625
+ +E+ E+ +E + + + KE L D E+EK
Sbjct: 209 EDKEEETEKDNEKEKEDKEEETKKDNEKEKEQLMGTDEKEKEK 251
>09_02_0057 -
3697255-3698116,3698191-3698351,3698442-3698636,
3698728-3699126,3699208-3699477,3700102-3700695
Length = 826
Score = 31.9 bits (69), Expect = 0.68
Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 7/83 (8%)
Frame = +2
Query: 326 EPAEAHRDSGEEPASGQRRCRSGESPPEPLGR----SRTLRQDSDEAHDDGRKESTAPDR 493
E R G G+R ESPP P + S +DS E D +E+ P
Sbjct: 60 EEESRSRRHGHHRDGGRRSLSPSESPPPPAAKRERSSSRAPRDSVERRDSADREAPPPSS 119
Query: 494 SYRSGE---GKEQIPERHRELRS 553
R G G E PE + R+
Sbjct: 120 RKRKGHEGGGNESDPEGGKRARA 142
>02_03_0172 +
15965342-15965711,15967757-15967849,15967976-15968060,
15968749-15968824,15968992-15969120,15969473-15969571,
15969661-15969762,15970257-15970415,15970507-15970602,
15971497-15971647,15971782-15971893,15972004-15972074,
15972548-15972984,15973421-15973492,15973713-15973810,
15974350-15974425,15975512-15975634,15975776-15975844
Length = 805
Score = 31.9 bits (69), Expect = 0.68
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 401 PPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPER 535
PP P GR R RQ + DG+ + D S RS +G P++
Sbjct: 89 PPPPRGRRRVTRQFWNAGDYDGKPDLLGGDPSLRSDDGGGMDPDK 133
>04_04_1188 +
31579833-31579914,31580001-31580176,31580822-31580923,
31581015-31581245,31581821-31581922,31582092-31582184,
31582275-31582379,31582455-31582514,31582621-31582698,
31582778-31582924,31583011-31583109,31583178-31583267,
31583360-31583451,31583529-31583646,31583783-31583871,
31583998-31584088,31584203-31584294,31584442-31584749,
31584866-31584897
Length = 728
Score = 31.5 bits (68), Expect = 0.89
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +2
Query: 335 EAHRDSGEEPASGQRR--CRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSG 508
E+ +SG+EP + + SG + P P + + D + DD ES+ D +
Sbjct: 328 ESSEESGDEPPQKKIKDSTTSGTTKPSPKATKKEISSDDESDEDDSSDESSDEDVKQKQT 387
Query: 509 EGKE 520
+ K+
Sbjct: 388 QAKK 391
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 31.5 bits (68), Expect = 0.89
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = +2
Query: 344 RDSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQ 523
R P+ RR +S P RSR R S + S +P RSY S G ++
Sbjct: 512 RGKSRSPSPSARRSKSRSRSPIKYRRSRRSRSYSPPVRHTRGRRSRSPSRSYHSKYGSDR 571
>06_02_0203 + 12986685-12988691
Length = 668
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 363 PLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTT 464
P+P+ + +AA++AH N G EH K + TTT
Sbjct: 505 PVPNSNAIAADEAHGNATAG-EHDKKETAEQTTT 537
>11_06_0198 - 21158350-21159528
Length = 392
Score = 29.9 bits (64), Expect = 2.7
Identities = 20/69 (28%), Positives = 28/69 (40%)
Frame = +2
Query: 368 SGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHREL 547
+GQ + + E + L R + D + H G KE R YR ++Q R E
Sbjct: 51 AGQDQRQLRECEEQCLQRQQEDDDDDENTHGGGGKECRRECRGYRDEPWRKQECMRQCEW 110
Query: 548 RSH*AEAHG 574
R H HG
Sbjct: 111 RRHEQHHHG 119
>08_01_0434 + 3809681-3810016,3810039-3811100
Length = 465
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +2
Query: 338 AHRDSGEEPASGQRRCRSGESPPEPLGRSR 427
A GE G+RR R G SPPEP R R
Sbjct: 58 ASSGGGEAGERGRRRGRLGFSPPEPPARER 87
>07_03_1577 -
27869596-27869682,27869769-27869869,27869956-27869995,
27870879-27870953
Length = 100
Score = 29.9 bits (64), Expect = 2.7
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +3
Query: 180 DLKSQLEGFNTSCLRDVDTNEKIVL 254
DL+S+L+ NT CL + + N+K+++
Sbjct: 54 DLQSKLDAVNTECLAEKEKNKKLII 78
>11_06_0021 +
19314211-19314311,19315202-19315307,19317135-19317412,
19318587-19318692,19318812-19319159,19319237-19319313,
19319392-19319516,19319884-19320135,19320314-19320336
Length = 471
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 335 EAHRDSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDE 451
E+H+DSG++ + +R R +S + S R DSDE
Sbjct: 213 ESHKDSGQKTSKNSKRARQ-DSDTSEINDSHCERGDSDE 250
>09_04_0377 + 17086775-17088310
Length = 511
Score = 29.5 bits (63), Expect = 3.6
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = +2
Query: 332 AEAHRDSGEEPASGQRRCRSGESPPEPL-GRSRTLRQDSDEAHDDGRKESTAPDRSYRSG 508
++ + E+ S ++ S +S E G S + +SD D + + T + R G
Sbjct: 160 SDEEEEEEEKKESPKKVASSDKSEEEDSKGSSESDSGESDSLSDSSKSDDTRRKKKGRKG 219
Query: 509 EGKEQIPERHRELRSH*AEAHGD 577
+ RHR R H ++ GD
Sbjct: 220 SHRSSKRSRHRR-RHHSSDTEGD 241
>09_04_0329 +
16726501-16726750,16726843-16726930,16727280-16727333,
16727590-16727739,16727884-16728015,16728279-16728423,
16728514-16728552,16728638-16728712,16728935-16728994,
16729120-16729184,16729519-16729609,16729806-16729820
Length = 387
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 420 RPRGSGGLSPLRQRLCPEAGSSPESRCASAG 328
R RG+ G+ LR L P A +SP ++ A+ G
Sbjct: 54 RRRGAHGVRALRPLLLPRASASPSAKTAAGG 84
>05_07_0354 -
29507068-29507170,29507406-29507431,29508264-29508301,
29508722-29508825,29509005-29509024,29509251-29509299,
29510319-29510406,29510463-29510562,29510660-29510737,
29512688-29512804,29513718-29513821,29514497-29514569,
29514904-29514981,29515091-29515215,29515278-29515341,
29515439-29515597,29515950-29516048,29516496-29516624,
29517010-29517075,29517160-29517304,29517379-29517500,
29517683-29517838,29517918-29518029,29518891-29519036,
29519148-29519252,29519391-29519540,29519703-29519776,
29519902-29520055,29520142-29520408
Length = 1016
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +3
Query: 315 KFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEK 473
K+D + ++ E QEK K + K ++ VE K +M HT+ ++
Sbjct: 262 KYDMKKKEYKEAQEKEKTEKKKMEEVAKIWEDSKGPVEELKKKKMSHTSNTKR 314
>11_06_0184 - 21006659-21009823
Length = 1054
Score = 29.1 bits (62), Expect = 4.8
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
Frame = +2
Query: 335 EAHRDSG-EEPASGQRRCRSGES-PPEPLGRSRTLRQDSD--EAHDDGRKESTAPDRSYR 502
+ + D G E+P + Q R+ E PP G ++Q D G KE P S
Sbjct: 212 QLNSDGGKEQPLAPQSDGRNKEQLPPPQSGGGNGIKQQQPLPPQSDGGDKEQPPPSLS-D 270
Query: 503 SGEGKEQIPERHRELRSH*AEAHGDVRKEPLPTKDVIEQ 619
G+ + +P R ++ GD +++P P D +Q
Sbjct: 271 GGDKDQPLPPDCGVKRQLPPQSDGDDKQQPPPQSDGSDQ 309
>07_03_0735 +
21075033-21075846,21077065-21077199,21077384-21077517,
21077604-21077814,21078033-21078270,21078346-21078496,
21078593-21078931
Length = 673
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 243 KIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKN 362
K VLPS E++A ++ S GIE+ + + + Q+KN
Sbjct: 361 KGVLPSGEEIAVKRLSMSSGQGIEELKNELVLVAKLQQKN 400
>03_05_0868 +
28385066-28385478,28386050-28386167,28386365-28386726,
28389308-28389406,28389485-28389890
Length = 465
Score = 29.1 bits (62), Expect = 4.8
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +2
Query: 323 FEPAEAHRDSGEEPASGQRR-CRSGESPPEPLGRSRTLRQDSDEAHDDGR-KESTAPDRS 496
F+ + D G +P G+RR + LGRS + D H+DG +E + D
Sbjct: 377 FDDSFDREDDGSDPDEGERRRAKVRTRAASTLGRSTGKSKIFDSIHEDGNGREDDSEDVL 436
Query: 497 YRSGEGKEQIPER 535
G+ + + +R
Sbjct: 437 PYEGQRRHIVSKR 449
>03_02_0985 - 12961787-12961984,12963177-12963337,12965332-12965489,
12966015-12966105,12966715-12966752,12966994-12967154,
12967249-12968687,12968815-12969227,12969630-12970987,
12971089-12971454,12971533-12971696,12971748-12971820,
12972967-12973113
Length = 1588
Score = 29.1 bits (62), Expect = 4.8
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +3
Query: 231 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQ-EKNPLPDKDVVAAEKAHQ 407
D EK + +DVA + K GIE D S K T + E N L D + ++
Sbjct: 927 DILEKTKRINDDDVAFHEKMKEHRAGIETLDLSGKKKTVKEWEDNRLSSMDHTSKGGDNE 986
Query: 408 NLLDGVEHFDKTQMKHTTTEEKNPL 482
NL + + K++ + ++ N L
Sbjct: 987 NLNERLSKIKKSEARPEEVQDANAL 1011
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +1
Query: 142 TLPP*KTSPRSPQT*RVSSKASTPAVSVTST 234
TLPP + SP SP T SSK TP+ S S+
Sbjct: 31 TLPPGRLSPVSPLTHSSSSKLPTPSSSSGSS 61
>04_04_0411 -
25014511-25015015,25015098-25015169,25015700-25015734,
25015805-25015873,25015993-25016044,25016444-25016526,
25016625-25016726,25017150-25017884,25017962-25018012,
25018792-25018983,25019066-25019216,25020012-25020193,
25020329-25020532,25020752-25020859
Length = 846
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 356 EEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDD 463
E P+SG+ R PP+ GR + +R + +DD
Sbjct: 675 ETPSSGKHRGTDVADPPKKRGRPKGVRSSNSSQNDD 710
>01_06_1402 +
37052996-37053449,37053533-37053630,37053718-37053888,
37054017-37054117,37054928-37055063,37055155-37055205,
37055311-37055598,37055896-37056130,37056408-37056523,
37057300-37057496,37057739-37057745
Length = 617
Score = 28.7 bits (61), Expect = 6.3
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Frame = +2
Query: 329 PAEAHRDSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSG 508
PA + PA+ + PP P +RT R+DSD +G ++ A
Sbjct: 74 PARPNSALPPPPAAAAANAEAKPQPPPPPPPARTRRRDSDGGRPNG--QAAAAPLPQLLE 131
Query: 509 EGKEQIPERHR-ELR 550
E + PER + ELR
Sbjct: 132 EEDDGAPERPKYELR 146
>01_06_0241 - 27813076-27813622,27813695-27814125
Length = 325
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +2
Query: 434 RQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH 556
R + + H+ ++S +RS+R+ ++ + HR RSH
Sbjct: 21 RVEPEANHESANQQSHHSNRSHRTASRNAEVEQPHRSNRSH 61
>12_01_0906 +
8799284-8799441,8800865-8801690,8801933-8802055,
8802144-8802210,8802611-8802714,8802798-8802900,
8803103-8803401,8804009-8804263,8805471-8805776,
8805866-8806194,8806829-8806916,8807027-8807164,
8807438-8807458
Length = 938
Score = 28.3 bits (60), Expect = 8.3
Identities = 26/89 (29%), Positives = 32/89 (35%), Gaps = 4/89 (4%)
Frame = +2
Query: 344 RDSGEEPASGQRRCRSGESPPEPLG----RSRTLRQDSDEAHDDGRKESTAPDRSYRSGE 511
R S ++ G+RR R + G R R S E+ D GR D S R
Sbjct: 107 RVSDDDKEGGRRRRRRSTDSDDERGDRHRRRHRRRSPSSESSDGGRSRRHRRDESSR--- 163
Query: 512 GKEQIPERHRELRSH*AEAHGDVRKEPLP 598
Q ER R+ RKEP P
Sbjct: 164 --RQRDERRRDRGGREERRRSPDRKEPTP 190
>12_01_0433 -
3402250-3402536,3402644-3403030,3403523-3403957,
3404071-3404562,3404718-3404821,3404913-3404994,
3405085-3405441,3405532-3406089,3406376-3406479,
3406575-3406650,3406764-3406898,3407192-3407494,
3407581-3408345,3409459-3412591,3412763-3412882
Length = 2445
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +2
Query: 344 RDSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQ 523
R G+ A G+ + E+P R+ D+D A DG KE A D + + ++Q
Sbjct: 136 RVGGDAAAEGEP---AAEAPRRRSRRNAVNSSDADGAEGDGAKEGEAVDNKRKQRQKQKQ 192
Query: 524 I 526
+
Sbjct: 193 V 193
>11_08_0081 -
28216179-28216381,28216590-28216657,28217131-28217298,
28217370-28217436,28217509-28217576,28218256-28218420,
28218490-28218556,28218629-28218696,28219855-28219992,
28220189-28220353,28221227-28221304,28221380-28221532,
28222753-28222823,28223077-28223203,28223306-28223565,
28223679-28223842,28224287-28224450,28225873-28226159
Length = 826
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Frame = +2
Query: 383 CRSGESPPEPLGRSRTL-RQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH* 559
CRS P SR+ R S HD R S +P + + + H+ S
Sbjct: 550 CRSPRPSPPGQSHSRSYSRSHSLHLHDHARTRSCSPAPGRQDDQYASPQRKEHQTKSSGQ 609
Query: 560 AEAHGDVRKEPLP 598
+ H D+R+ P
Sbjct: 610 TKGHDDMRRSYTP 622
>06_03_0723 + 23875008-23875204,23875311-23875576,23877166-23877274,
23877577-23878212,23878328-23878573,23878669-23878834,
23878863-23879076,23879580-23880097,23880617-23880683,
23882131-23882215,23882292-23882367,23882593-23882756,
23883088-23883217,23883314-23883430,23883505-23883600,
23883732-23884009,23886571-23886794,23886935-23887011,
23887103-23887145,23887231-23887288,23888371-23888410,
23888891-23889418
Length = 1444
Score = 28.3 bits (60), Expect = 8.3
Identities = 27/92 (29%), Positives = 38/92 (41%)
Frame = +2
Query: 329 PAEAHRDSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSG 508
P E ++DS + S + ESP S + S +HDD R+ T PD S R+G
Sbjct: 1312 PGEPYQDSNKTDPSTP--VPTSESPIRDKAGSGLFKTIS--SHDDCREPLT-PDSSCRAG 1366
Query: 509 EGKEQIPERHRELRSH*AEAHGDVRKEPLPTK 604
E P + +R H + P P K
Sbjct: 1367 SPLESPPRASKRIRVSSDIDHRGNNEFPPPLK 1398
>04_04_0057 + 22410167-22411330
Length = 387
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/70 (24%), Positives = 25/70 (35%)
Frame = +2
Query: 329 PAEAHRDSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSG 508
P A + P R S PP P + + D++ +D RKE RS
Sbjct: 187 PPPAAAAASPSPERSPRCQPSPPPPPPPHALVIPVEDEEDDSDEDDRKEEAVELEMLRSE 246
Query: 509 EGKEQIPERH 538
++P H
Sbjct: 247 RRAARLPRSH 256
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,588,944
Number of Sequences: 37544
Number of extensions: 455186
Number of successful extensions: 1663
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1655
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -