Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_J01
         (860 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             29   0.055
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    27   0.17 
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    23   2.7  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.7  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    23   2.7  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   4.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 29.1 bits (62), Expect = 0.055
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 398  SPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSGEGKE 520
            SPP PL  SR   +D D   D  + + ++ +R   +G  +E
Sbjct: 1396 SPPTPLSISRAGSRDEDSTRDSTKLDRSSREREVHNGGQQE 1436


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +2

Query: 449 EAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH*AEAHGDVRKEPLPTKDVIE 616
           E HDD  + S  P   + + E    I    R+ RS    AH +    P+  + V+E
Sbjct: 59  EGHDDREQPSVYPLLRFENPETHHPIRHGRRQSRSMDLNAHREQMSWPVKKEAVVE 114


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 374 QRRCRSGESPPEPLGR 421
           Q +C  GE+P +P+GR
Sbjct: 51  QLKCALGEAPCDPVGR 66


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 132 SVSDTPSLKDLPKVATDLKS 191
           SVS  PS+K + K ATD  S
Sbjct: 156 SVSCVPSVKHVAKCATDFSS 175


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 374 QRRCRSGESPPEPLGR 421
           Q +C  GE+P +P+GR
Sbjct: 51  QLKCALGEAPCDPVGR 66


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -2

Query: 139 LTEQAILNQYIFDDEGDRRFVHSATLSDCDXKILRNSL 26
           LTE  I+   + D +GD   +    + DC   I R  L
Sbjct: 299 LTEAIIVQAELMDLKGDLEGLVEGVIIDCSNHIGRGKL 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,621
Number of Sequences: 438
Number of extensions: 4645
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)