Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_I20
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomy...    71   2e-13
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    27   4.5  
SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   7.9  

>SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 136

 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
 Frame = +2

Query: 284 AEKKAKMADRTNDKEPTWVLQG--KKLLKVREFKGKVYVDIREFYEKNGELLPGKKGISL 457
           A  K    ++ +D E  W L    KK + + EF+G  YV IRE+YEK+G++LPGKKGI+L
Sbjct: 13  ASSKKPKTEKQSDHELHWALNETEKKRITLSEFRGTRYVHIREYYEKDGDMLPGKKGIAL 72

Query: 458 TPEQWRKLLSVGEEVNETV 514
              +W+KL  +  EV++++
Sbjct: 73  NINEWKKLKQLIHEVDDSL 91


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +2

Query: 146 LYPIQNSIVCNFQ*CLNKRE--KKNLRTRKTIVLVVTVMTALXDRNPPAEKKAKMADRTN 319
           LY   N +V +F    NKR      +   +TIV V  + T      PP  +K+K+++   
Sbjct: 41  LYDSDNRVVDDFF-LNNKRIVLDSEIEFNRTIVYVENLQTTTEANIPPIPRKSKLSE--T 97

Query: 320 DKEPTWVLQ 346
            K P ++L+
Sbjct: 98  GKRPAYLLK 106


>SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 117

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 442 FTW*KFTILFIKFSYVYIYFSFEFS 368
           + W K   +F+KFS + + FS  FS
Sbjct: 49  YQWFKHQSVFLKFSLIVLLFSLMFS 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,183,995
Number of Sequences: 5004
Number of extensions: 33939
Number of successful extensions: 128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)