Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_I20
(864 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X79805-1|CAA56200.1| 127|Homo sapiens PC4, p15 protein. 62 2e-09
U12979-1|AAA20980.1| 127|Homo sapiens PC4 protein. 62 2e-09
CR456902-1|CAG33183.1| 127|Homo sapiens PC4 protein. 62 2e-09
BC105972-1|AAI05973.1| 127|Homo sapiens SUB1 homolog (S. cerevi... 62 2e-09
BC022339-1|AAH22339.1| 127|Homo sapiens SUB1 homolog (S. cerevi... 62 2e-09
BC018189-1|AAH18189.1| 127|Homo sapiens SUB1 homolog (S. cerevi... 62 2e-09
BC010537-1|AAH10537.1| 127|Homo sapiens SUB1 homolog (S. cerevi... 62 2e-09
BC009610-1|AAH09610.1| 127|Homo sapiens SUB1 homolog (S. cerevi... 62 2e-09
AB209285-1|BAD92522.1| 134|Homo sapiens activated RNA polymeras... 62 2e-09
AY584192-1|AAT72821.1| 73|Homo sapiens activated RNA polymeras... 58 5e-08
Y08982-1|CAA70171.1| 1530|Homo sapiens synaptonemal complex late... 37 0.082
BC132870-1|AAI32871.1| 1530|Homo sapiens synaptonemal complex pr... 37 0.082
BC132864-1|AAI32865.1| 1530|Homo sapiens synaptonemal complex pr... 37 0.082
BC040566-1|AAH40566.1| 1024|Homo sapiens SYCP2 protein protein. 37 0.082
AL158092-3|CAM28338.1| 1023|Homo sapiens synaptonemal complex pr... 37 0.082
AL158092-2|CAC36022.2| 1530|Homo sapiens synaptonemal complex pr... 37 0.082
AL109928-10|CAM28269.1| 1023|Homo sapiens synaptonemal complex p... 37 0.082
AL109928-9|CAI21795.1| 1530|Homo sapiens synaptonemal complex pr... 37 0.082
AL080226-1|CAB45780.1| 520|Homo sapiens hypothetical protein pr... 32 2.3
BC146798-1|AAI46799.1| 792|Homo sapiens Unknown (protein for IM... 31 5.4
>X79805-1|CAA56200.1| 127|Homo sapiens PC4, p15 protein.
Length = 127
Score = 62.5 bits (145), Expect = 2e-09
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Frame = +2
Query: 209 KNLRTRKTIVLVVTVMTALXDRNPPAEKKAKMADRTNDKEPTWVLQGKKLLKVREFKGKV 388
K L+ +K + V A +K + + D + + + + + VR+FKGKV
Sbjct: 23 KKLKRKKQVAPEKPVKKQKTGETSRALSSSKQSSSSRD-DNMFQIGKMRYVSVRDFKGKV 81
Query: 389 YVDIREFY-EKNGELLPGKKGISLTPEQWRKLLSVGEEVNETVSSM 523
+DIRE++ + GE+ PG+KGISL PEQW +L ++++ V +
Sbjct: 82 LIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 127
>U12979-1|AAA20980.1| 127|Homo sapiens PC4 protein.
Length = 127
Score = 62.5 bits (145), Expect = 2e-09
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Frame = +2
Query: 209 KNLRTRKTIVLVVTVMTALXDRNPPAEKKAKMADRTNDKEPTWVLQGKKLLKVREFKGKV 388
K L+ +K + V A +K + + D + + + + + VR+FKGKV
Sbjct: 23 KKLKRKKQVAPEKPVKKQKTGETSRALSSSKQSSSSRD-DNMFQIGKMRYVSVRDFKGKV 81
Query: 389 YVDIREFY-EKNGELLPGKKGISLTPEQWRKLLSVGEEVNETVSSM 523
+DIRE++ + GE+ PG+KGISL PEQW +L ++++ V +
Sbjct: 82 LIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 127
>CR456902-1|CAG33183.1| 127|Homo sapiens PC4 protein.
Length = 127
Score = 62.5 bits (145), Expect = 2e-09
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Frame = +2
Query: 209 KNLRTRKTIVLVVTVMTALXDRNPPAEKKAKMADRTNDKEPTWVLQGKKLLKVREFKGKV 388
K L+ +K + V A +K + + D + + + + + VR+FKGKV
Sbjct: 23 KKLKRKKQVAPEKPVKKQKTGETSRALSSSKQSSSSRD-DNMFQIGKMRYVSVRDFKGKV 81
Query: 389 YVDIREFY-EKNGELLPGKKGISLTPEQWRKLLSVGEEVNETVSSM 523
+DIRE++ + GE+ PG+KGISL PEQW +L ++++ V +
Sbjct: 82 LIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 127
>BC105972-1|AAI05973.1| 127|Homo sapiens SUB1 homolog (S.
cerevisiae) protein.
Length = 127
Score = 62.5 bits (145), Expect = 2e-09
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Frame = +2
Query: 209 KNLRTRKTIVLVVTVMTALXDRNPPAEKKAKMADRTNDKEPTWVLQGKKLLKVREFKGKV 388
K L+ +K + V A +K + + D + + + + + VR+FKGKV
Sbjct: 23 KKLKRKKQVAPEKPVKKQKTGETSRALSSSKQSSSSRD-DNMFQIGKMRYVSVRDFKGKV 81
Query: 389 YVDIREFY-EKNGELLPGKKGISLTPEQWRKLLSVGEEVNETVSSM 523
+DIRE++ + GE+ PG+KGISL PEQW +L ++++ V +
Sbjct: 82 LIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 127
>BC022339-1|AAH22339.1| 127|Homo sapiens SUB1 homolog (S.
cerevisiae) protein.
Length = 127
Score = 62.5 bits (145), Expect = 2e-09
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Frame = +2
Query: 209 KNLRTRKTIVLVVTVMTALXDRNPPAEKKAKMADRTNDKEPTWVLQGKKLLKVREFKGKV 388
K L+ +K + V A +K + + D + + + + + VR+FKGKV
Sbjct: 23 KKLKRKKQVAPEKPVKKQKTGETSRALSSSKQSSSSRD-DNMFQIGKMRYVSVRDFKGKV 81
Query: 389 YVDIREFY-EKNGELLPGKKGISLTPEQWRKLLSVGEEVNETVSSM 523
+DIRE++ + GE+ PG+KGISL PEQW +L ++++ V +
Sbjct: 82 LIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 127
>BC018189-1|AAH18189.1| 127|Homo sapiens SUB1 homolog (S.
cerevisiae) protein.
Length = 127
Score = 62.5 bits (145), Expect = 2e-09
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Frame = +2
Query: 209 KNLRTRKTIVLVVTVMTALXDRNPPAEKKAKMADRTNDKEPTWVLQGKKLLKVREFKGKV 388
K L+ +K + V A +K + + D + + + + + VR+FKGKV
Sbjct: 23 KKLKRKKQVAPEKPVKKQKTGETSRALSSSKQSSSSRD-DNMFQIGKMRYVSVRDFKGKV 81
Query: 389 YVDIREFY-EKNGELLPGKKGISLTPEQWRKLLSVGEEVNETVSSM 523
+DIRE++ + GE+ PG+KGISL PEQW +L ++++ V +
Sbjct: 82 LIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 127
>BC010537-1|AAH10537.1| 127|Homo sapiens SUB1 homolog (S.
cerevisiae) protein.
Length = 127
Score = 62.5 bits (145), Expect = 2e-09
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Frame = +2
Query: 209 KNLRTRKTIVLVVTVMTALXDRNPPAEKKAKMADRTNDKEPTWVLQGKKLLKVREFKGKV 388
K L+ +K + V A +K + + D + + + + + VR+FKGKV
Sbjct: 23 KKLKRKKQVAPEKPVKKQKTGETSRALSSSKQSSSSRD-DNMFQIGKMRYVSVRDFKGKV 81
Query: 389 YVDIREFY-EKNGELLPGKKGISLTPEQWRKLLSVGEEVNETVSSM 523
+DIRE++ + GE+ PG+KGISL PEQW +L ++++ V +
Sbjct: 82 LIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 127
>BC009610-1|AAH09610.1| 127|Homo sapiens SUB1 homolog (S.
cerevisiae) protein.
Length = 127
Score = 62.5 bits (145), Expect = 2e-09
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Frame = +2
Query: 209 KNLRTRKTIVLVVTVMTALXDRNPPAEKKAKMADRTNDKEPTWVLQGKKLLKVREFKGKV 388
K L+ +K + V A +K + + D + + + + + VR+FKGKV
Sbjct: 23 KKLKRKKQVAPEKPVKKQKTGETSRALSSSKQSSSSRD-DNMFQIGKMRYVSVRDFKGKV 81
Query: 389 YVDIREFY-EKNGELLPGKKGISLTPEQWRKLLSVGEEVNETVSSM 523
+DIRE++ + GE+ PG+KGISL PEQW +L ++++ V +
Sbjct: 82 LIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 127
>AB209285-1|BAD92522.1| 134|Homo sapiens activated RNA polymerase
II transcription cofactor 4 variant protein.
Length = 134
Score = 62.5 bits (145), Expect = 2e-09
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Frame = +2
Query: 209 KNLRTRKTIVLVVTVMTALXDRNPPAEKKAKMADRTNDKEPTWVLQGKKLLKVREFKGKV 388
K L+ +K + V A +K + + D + + + + + VR+FKGKV
Sbjct: 30 KKLKRKKQVAPEKPVKKQKTGETSRALSSSKQSSSSRD-DNMFQIGKMRYVSVRDFKGKV 88
Query: 389 YVDIREFY-EKNGELLPGKKGISLTPEQWRKLLSVGEEVNETVSSM 523
+DIRE++ + GE+ PG+KGISL PEQW +L ++++ V +
Sbjct: 89 LIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 134
>AY584192-1|AAT72821.1| 73|Homo sapiens activated RNA polymerase
II transcription cofactor 4 protein.
Length = 73
Score = 57.6 bits (133), Expect = 5e-08
Identities = 24/58 (41%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Frame = +2
Query: 353 KLLKVREFKGKVYVDIREFY-EKNGELLPGKKGISLTPEQWRKLLSVGEEVNETVSSM 523
+ + VR+FKGK+ +DIRE++ + GE+ PG+KGISL EQW +L ++++ V +
Sbjct: 16 RYVSVRDFKGKILIDIREYWMDSEGEMKPGRKGISLNMEQWSQLKEQISDIDDAVRKL 73
>Y08982-1|CAA70171.1| 1530|Homo sapiens synaptonemal complex lateral
element protein protein.
Length = 1530
Score = 37.1 bits (82), Expect = 0.082
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = +2
Query: 191 LNKREKKNLRTRKTIVLVVTVMTALXDRNPPAEKKAKMADRTNDKEPTWVLQG--KKLLK 364
LNK +++L RK +L V TA D+NP A K + + R +KE T L K K
Sbjct: 729 LNKTIEESLIYRKKYILSKDVNTATCDKNPSASKNVQ-SHRKAEKELTSELNSWDSKQKK 787
Query: 365 VRE-FKGKVYVDIRE 406
+RE KGK + ++ E
Sbjct: 788 MREKSKGKEFTNVAE 802
>BC132870-1|AAI32871.1| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 37.1 bits (82), Expect = 0.082
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = +2
Query: 191 LNKREKKNLRTRKTIVLVVTVMTALXDRNPPAEKKAKMADRTNDKEPTWVLQG--KKLLK 364
LNK +++L RK +L V TA D+NP A K + + R +KE T L K K
Sbjct: 729 LNKTIEESLIYRKKYILSKDVNTATCDKNPSASKNVQ-SHRKAEKELTSELNSWDSKQKK 787
Query: 365 VRE-FKGKVYVDIRE 406
+RE KGK + ++ E
Sbjct: 788 MREKSKGKEFTNVAE 802
>BC132864-1|AAI32865.1| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 37.1 bits (82), Expect = 0.082
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = +2
Query: 191 LNKREKKNLRTRKTIVLVVTVMTALXDRNPPAEKKAKMADRTNDKEPTWVLQG--KKLLK 364
LNK +++L RK +L V TA D+NP A K + + R +KE T L K K
Sbjct: 729 LNKTIEESLIYRKKYILSKDVNTATCDKNPSASKNVQ-SHRKAEKELTSELNSWDSKQKK 787
Query: 365 VRE-FKGKVYVDIRE 406
+RE KGK + ++ E
Sbjct: 788 MREKSKGKEFTNVAE 802
>BC040566-1|AAH40566.1| 1024|Homo sapiens SYCP2 protein protein.
Length = 1024
Score = 37.1 bits (82), Expect = 0.082
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = +2
Query: 191 LNKREKKNLRTRKTIVLVVTVMTALXDRNPPAEKKAKMADRTNDKEPTWVLQG--KKLLK 364
LNK +++L RK +L V TA D+NP A K + + R +KE T L K K
Sbjct: 729 LNKTIEESLIYRKKYILSKDVNTATCDKNPSASKNVQ-SHRKAEKELTSELNSWDSKQKK 787
Query: 365 VRE-FKGKVYVDIRE 406
+RE KGK + ++ E
Sbjct: 788 MREKSKGKEFTNVAE 802
>AL158092-3|CAM28338.1| 1023|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1023
Score = 37.1 bits (82), Expect = 0.082
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = +2
Query: 191 LNKREKKNLRTRKTIVLVVTVMTALXDRNPPAEKKAKMADRTNDKEPTWVLQG--KKLLK 364
LNK +++L RK +L V TA D+NP A K + + R +KE T L K K
Sbjct: 729 LNKTIEESLIYRKKYILSKDVNTATCDKNPSASKNVQ-SHRKAEKELTSELNSWDSKQKK 787
Query: 365 VRE-FKGKVYVDIRE 406
+RE KGK + ++ E
Sbjct: 788 MREKSKGKEFTNVAE 802
>AL158092-2|CAC36022.2| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 37.1 bits (82), Expect = 0.082
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = +2
Query: 191 LNKREKKNLRTRKTIVLVVTVMTALXDRNPPAEKKAKMADRTNDKEPTWVLQG--KKLLK 364
LNK +++L RK +L V TA D+NP A K + + R +KE T L K K
Sbjct: 729 LNKTIEESLIYRKKYILSKDVNTATCDKNPSASKNVQ-SHRKAEKELTSELNSWDSKQKK 787
Query: 365 VRE-FKGKVYVDIRE 406
+RE KGK + ++ E
Sbjct: 788 MREKSKGKEFTNVAE 802
>AL109928-10|CAM28269.1| 1023|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1023
Score = 37.1 bits (82), Expect = 0.082
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = +2
Query: 191 LNKREKKNLRTRKTIVLVVTVMTALXDRNPPAEKKAKMADRTNDKEPTWVLQG--KKLLK 364
LNK +++L RK +L V TA D+NP A K + + R +KE T L K K
Sbjct: 729 LNKTIEESLIYRKKYILSKDVNTATCDKNPSASKNVQ-SHRKAEKELTSELNSWDSKQKK 787
Query: 365 VRE-FKGKVYVDIRE 406
+RE KGK + ++ E
Sbjct: 788 MREKSKGKEFTNVAE 802
>AL109928-9|CAI21795.1| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 37.1 bits (82), Expect = 0.082
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = +2
Query: 191 LNKREKKNLRTRKTIVLVVTVMTALXDRNPPAEKKAKMADRTNDKEPTWVLQG--KKLLK 364
LNK +++L RK +L V TA D+NP A K + + R +KE T L K K
Sbjct: 729 LNKTIEESLIYRKKYILSKDVNTATCDKNPSASKNVQ-SHRKAEKELTSELNSWDSKQKK 787
Query: 365 VRE-FKGKVYVDIRE 406
+RE KGK + ++ E
Sbjct: 788 MREKSKGKEFTNVAE 802
>AL080226-1|CAB45780.1| 520|Homo sapiens hypothetical protein
protein.
Length = 520
Score = 32.3 bits (70), Expect = 2.3
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +2
Query: 191 LNKREKKNLRTRKTIVLVVTVMTALXDRNPPAEKKAKMADRTNDKEPTWVLQG--KKLLK 364
LNK +++L RK +L V TA D+NP A K + + R +KE T L K K
Sbjct: 451 LNKTIEESLIYRKKYILSKDVNTATCDKNPSASKNVQ-SHRKAEKELTSELNSWDSKQKK 509
Query: 365 VRE 373
+RE
Sbjct: 510 MRE 512
>BC146798-1|AAI46799.1| 792|Homo sapiens Unknown (protein for
IMAGE:8860302) protein.
Length = 792
Score = 31.1 bits (67), Expect = 5.4
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = +2
Query: 191 LNKREKKNLRTRKTIVLVVTVMTALXDRNPPAEKKAKMADRTNDKEPT 334
LNK +++L RK +L V TA D+NP A K + + R +KE T
Sbjct: 728 LNKTIEESLIYRKKYILSKDVNTATCDKNPSASKNVQ-SHRKAEKELT 774
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,628,054
Number of Sequences: 237096
Number of extensions: 1303054
Number of successful extensions: 11354
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 7603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10921
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 11039988564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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