Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_I19
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...   129   4e-31
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb...    30   0.48 
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    28   1.5  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    28   1.9  

>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2111

 Score =  129 bits (312), Expect = 4e-31
 Identities = 78/184 (42%), Positives = 102/184 (55%), Gaps = 11/184 (5%)
 Frame = +3

Query: 267 WEG--PPKQGLYDPQNEHEACGVGFVVAIDGKRSHKIVRDAEVLAKRMEHRGACACDNDT 440
           W G  P  Q LYDP  E ++CGVGF   I G+ SHKIV DA +L   M HRGA   D   
Sbjct: 49  WAGALPKAQALYDPAYEKDSCGVGFTCHIKGQVSHKIVTDARLLLCNMTHRGATGADTRD 108

Query: 441 GDGAGVLTAIPHQFYCAQLRDSHQIDLPPFGRYATG-IFFLDKLH-HQDIEAKFLVLAES 614
           GDGAGV+T +P+ F   +        LP  G YA G +FF  +    ++    F  +AE 
Sbjct: 109 GDGAGVMTGMPYTFMQKEF-GQIGCTLPKSGEYAIGNVFFSPEADVCREAMTAFTQVAEK 167

Query: 615 LGLKVLCWRTVPTKNSSIGQVARNSEPYMRQVFVT------GDIEDETQL-SRQIFVLRK 773
           LGL +L WR+VP  NS +G  A + EP + Q  V       G+ E +T L  RQ++VLRK
Sbjct: 168 LGLAILAWRSVPCDNSILGPAALSREPTILQPCVVLKAAYDGEAEFDTDLFERQLYVLRK 227

Query: 774 RASH 785
           ++SH
Sbjct: 228 QSSH 231


>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 282 KQGLYDPQNEHEACGVGFVVAIDGKRSHKIV 374
           K GL D ++ HE+ G+GF+   D K   K+V
Sbjct: 16  KIGLNDYRHVHESLGIGFIALEDIKEDEKLV 46


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +3

Query: 537 YATGIFFLDKLHHQDIEAKFLVLAESLGLKVL 632
           Y+TG  ++++   ++IE +  VL ESLGLK L
Sbjct: 233 YSTGFGWINETTGENIEMEDFVLYESLGLKDL 264


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 572 SPGHRSQVSSTSRESWS*GAVLAYRSYKKQQHRSGGS 682
           SP H     ST     S G++  Y+S ++  HR G S
Sbjct: 119 SPSHNDSSPSTQSSLKSRGSIRRYKSVREGSHRPGRS 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,383,173
Number of Sequences: 5004
Number of extensions: 69345
Number of successful extensions: 183
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)