Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_I18
         (896 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068716-1|AAC17747.1|  247|Caenorhabditis elegans Hypothetical ...    31   1.5  
Z92782-2|CAB07188.1|  331|Caenorhabditis elegans Hypothetical pr...    30   2.0  

>AF068716-1|AAC17747.1|  247|Caenorhabditis elegans Hypothetical
           protein F26D11.4 protein.
          Length = 247

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -3

Query: 609 NKKNE*HRRIRQHYPSIIYVCIKLNLL*SCVCILVDN 499
           N KNE   +   H  SI+++  KL L+ SC  +LVD+
Sbjct: 7   NYKNENSEQFSLHSMSILFILFKLLLVASCFHVLVDS 43


>Z92782-2|CAB07188.1|  331|Caenorhabditis elegans Hypothetical
           protein F14F8.3 protein.
          Length = 331

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 17/70 (24%), Positives = 34/70 (48%)
 Frame = -1

Query: 554 MYVLNLIYYKAVCVFWLTIIICYRSTSFFTYWQMP*KLPIYNSYI*VHNLIANIYI*IYV 375
           +Y +   +YK++CVF++   +C   T     +  P       + I V  ++  + I ++V
Sbjct: 58  IYPITNYFYKSLCVFYIFSTVCIIITVLILIYGPPNAFTGTVNIIFVFCIVFPLIIFVHV 117

Query: 374 FKLIIFVFHI 345
             LIIF+  +
Sbjct: 118 HHLIIFLMAV 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,923,130
Number of Sequences: 27780
Number of extensions: 355435
Number of successful extensions: 641
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)