Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_I17
         (882 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025467-3|AAB71035.2|  213|Caenorhabditis elegans Hypothetical ...    31   0.83 
Z70783-10|CAC70122.1| 1037|Caenorhabditis elegans Hypothetical p...    29   5.8  
AF016655-3|AAU05587.1|  322|Caenorhabditis elegans Serpentine re...    28   7.7  

>AF025467-3|AAB71035.2|  213|Caenorhabditis elegans Hypothetical
           protein R148.4 protein.
          Length = 213

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +3

Query: 33  SLRFVVFVXVIMCEDLKDCVSNIESTFDRTFIVLSLITTAV-GVKIIVKLFRFYSLKYSR 209
           +L+ +VF+ + M  +L++ + N+     +   +L LI TA+  + ++  LF F       
Sbjct: 40  TLQLIVFIVIFMHPELRNML-NLNPNLKQNQDILLLILTAMSSIWLLTVLFSFVGFMKKI 98

Query: 210 TYETIPL 230
           TY  +PL
Sbjct: 99  TYSHLPL 105


>Z70783-10|CAC70122.1| 1037|Caenorhabditis elegans Hypothetical
           protein ZK856.13 protein.
          Length = 1037

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -2

Query: 206 GILQGIETK*FNNYLHANGSGNKRKNDE 123
           GI+ GI+TK     LH NGSGN+++ +E
Sbjct: 45  GIIAGIDTKPHLTGLH-NGSGNRKRVEE 71


>AF016655-3|AAU05587.1|  322|Caenorhabditis elegans Serpentine
           receptor, class z protein67 protein.
          Length = 322

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
 Frame = -1

Query: 528 FFXLRGYRNGESTFKISSKSVEVMIFSKLSKLLSG*VNFIYFNYFCKYIFRINSSNFFRT 349
           +F  RG++N  ST+ +   S  + +F+++ ++    +  + F  F  Y F     N    
Sbjct: 82  YFFHRGHKNRISTYTLILTSYALYLFNQVFRIS---IIALSFERFLVYFFPTTEKNIILV 138

Query: 348 NGKKSFIIRVPIKFKIWILVERPLTQFINN--TFGHVTKPFVTVWS 217
           N   S+II+  IK+    L  + +   + +  TF   + P+  +WS
Sbjct: 139 N---SYIIK-RIKYIYLGLFIKDIICIVLHAVTFFDDSHPYYLIWS 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,607,920
Number of Sequences: 27780
Number of extensions: 310429
Number of successful extensions: 726
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)