Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_I16
         (938 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce...    73   4e-14
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    26   6.7  
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c...    26   6.7  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   8.8  

>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 73.3 bits (172), Expect = 4e-14
 Identities = 33/91 (36%), Positives = 55/91 (60%)
 Frame = +1

Query: 325 EFKEDDFTRVWKGIFYAMWMSDKPLVQEDLAENIAGILDHFPPEHLHHAMLMTKAGFKVL 504
           +F+  DF ++WKG+FY MWM+DKPL Q+ L++N+A ++   P   + + +L     ++ +
Sbjct: 35  KFERLDFLKLWKGLFYCMWMADKPLYQQKLSDNLAALV---PIVWIDNRILFQSTFWETM 91

Query: 505 ATEWFGIDQHXXDKCLMLARRYLRGSIRCLQ 597
             EW GID    DK  +L RR+   + R +Q
Sbjct: 92  GREWTGIDILRTDKFYLLMRRFCAAAFRDIQ 122


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 332 LNSYHPVKTILEPLFQCFNH 273
           L +YHP   IL+P+ Q  NH
Sbjct: 193 LRTYHPSPIILKPVEQAVNH 212


>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 410 SSCTSGLSDIHIA*NIPFH 354
           SS +SG SD+HIA N  FH
Sbjct: 399 SSASSGGSDVHIAFNYWFH 417


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 465  SCNAYDKGWLQGVGHGVVWN 524
            SC  Y   +L   GHG+V+N
Sbjct: 1308 SCGEYFSSFLNSSGHGIVYN 1327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,027,193
Number of Sequences: 5004
Number of extensions: 54722
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)