Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_I16
         (938 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68882-10|CAA93111.1|  397|Caenorhabditis elegans Hypothetical p...    69   5e-12
Z92838-5|CAB07404.2|  578|Caenorhabditis elegans Hypothetical pr...    33   0.29 
U64835-4|AAG24197.2|  343|Caenorhabditis elegans Serpentine rece...    31   1.6  

>Z68882-10|CAA93111.1|  397|Caenorhabditis elegans Hypothetical
           protein C47E12.7 protein.
          Length = 397

 Score = 68.9 bits (161), Expect = 5e-12
 Identities = 36/102 (35%), Positives = 53/102 (51%)
 Frame = +1

Query: 328 FKEDDFTRVWKGIFYAMWMSDKPLVQEDLAENIAGILDHFPPEHLHHAMLMTKAGFKVLA 507
           F + D  R+ KG+ Y MWM DK ++QE+LA+ I G+++ F  E     +       K L+
Sbjct: 44  FDDADLMRLCKGLHYVMWMQDKMILQEELADRIGGLINIFTSE--EEKVRFVACFLKSLS 101

Query: 508 TEWFGIDQHXXDKCLMLARRYLRGSIRCLQRCEWSVDSCNKY 633
            EW  ID+   DK LM  RR +R     L   +W  D  ++Y
Sbjct: 102 KEWPHIDRWRMDKFLMEVRRMVRACFTHLAELKWKKDIRDEY 143


>Z92838-5|CAB07404.2|  578|Caenorhabditis elegans Hypothetical
           protein T03D8.6 protein.
          Length = 578

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = +1

Query: 370 YAMWMSDKPLVQEDLAENIAGILDHFPPEH-LHHAMLMTKAGFKVLAT----EWFG 522
           Y  W+ D+   +   ++N  GI  + PP+H   H   M + G  V AT     WFG
Sbjct: 355 YTQWVIDRMTDKAQSSKNYGGIAQYVPPDHGTSHVSAMDQYGNGVSATTTINRWFG 410


>U64835-4|AAG24197.2|  343|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 25 protein.
          Length = 343

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 501 VGHGVVWNRSTXNX*M-SYACP*IFTWEYPVSAT 599
           + H V W + T N  + S  CP +FTW+  +S T
Sbjct: 140 IWHKVFWKKHTNNVIIVSLICPALFTWQLAISPT 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,113,002
Number of Sequences: 27780
Number of extensions: 316971
Number of successful extensions: 738
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2423194158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)