Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_I15
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    28   1.5  
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    26   6.0  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    26   8.0  

>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 38/145 (26%), Positives = 56/145 (38%), Gaps = 2/145 (1%)
 Frame = +2

Query: 248 LPSPVQCSPKTTSDRGDNSRLHLVTSAPA*RPTRTSSKSIWTCSTSRRKRFR*RLPTGTS 427
           L  P++  P TTSD   +     V+S+P+    R    S+    T    +      T ++
Sbjct: 260 LDEPIKALPSTTSDAPSSLLNTNVSSSPS--KFRKFLSSVIPAKTDLSAK---ESLTSST 314

Query: 428 WWKASTKRRKTSTGIFQGSSSDVTRCLKARRLRLWNRGC--HQTGFSPSPXXXXXXXXXX 601
               S K RK S+G+   SS  VT   K R+  + N     H T F   P          
Sbjct: 315 RLSTSYKTRKRSSGV-AFSSETVTSSSKERKRSVENEMLKPHPTIFESPPEITSFDKSNA 373

Query: 602 XEKGAHRTDRSRSQGDQGPERGNPG 676
            E  A  T + +S  ++ P    PG
Sbjct: 374 VEAEA-LTAKLKSNEERLPVSSQPG 397


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -1

Query: 688 LFSASWVPSLWSLISLR 638
           L+S+SW+P+L  L+S R
Sbjct: 285 LYSSSWIPTLHDLVSTR 301


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 256 ACPVLSEDYFRPWRQLAAAS 315
           +CP+ +EDY++ + Q+ AAS
Sbjct: 242 SCPLCNEDYYKYFLQMDAAS 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,156,076
Number of Sequences: 5004
Number of extensions: 60837
Number of successful extensions: 154
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)