Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_I13
         (825 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC830.09c |||RNase P and RNase MRP subunit |Schizosaccharomyce...    27   2.4  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   3.2  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    26   7.5  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   9.9  

>SPCC830.09c |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 139

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = -3

Query: 325 VRTIIGSDFGNVAVGSXFAPITLRILAP 242
           +RT++  +FG+V +G   + +T++  +P
Sbjct: 42  IRTMVAENFGDVGIGKVASSLTVKYFSP 69


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +2

Query: 137 FGFQNVGSFIRECNGTTLRYDQACLSILTDQ---EVTIWSQYAE 259
           + FQ +GSF+++     L    AC++++ D+   E+ ++S + E
Sbjct: 586 WSFQTLGSFVKQLPSRILINSTACVNVILDRIWCELCMFSYFRE 629


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/20 (45%), Positives = 17/20 (85%)
 Frame = -1

Query: 78  FLISTENTLKILKS*GFPIV 19
           ++++T+ TLK++ + GFPIV
Sbjct: 468 YVVNTDGTLKVVITNGFPIV 487


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 274 FAPITLRILAPYSNFLIGQNT 212
           F P +L +   YSNFLIG  T
Sbjct: 466 FDPTSLTVDEEYSNFLIGSRT 486


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,313,979
Number of Sequences: 5004
Number of extensions: 41731
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)