Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_I09
         (874 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1477 + 33873976-33874080,33874433-33874544,33874777-338748...    31   0.91 
01_07_0084 + 40976976-40977164,40978174-40978201,40978445-409785...    30   2.1  
02_03_0383 + 18385109-18385307,18385431-18385516,18385565-183857...    29   6.4  
12_02_0416 - 18891945-18892319,18892416-18892550,18892634-18893638     28   8.5  
01_05_0250 - 19907517-19908429,19910000-19910268                       28   8.5  

>04_04_1477 +
           33873976-33874080,33874433-33874544,33874777-33874874,
           33875548-33876261,33876348-33876518,33876955-33877011,
           33877096-33878718
          Length = 959

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 2/104 (1%)
 Frame = -1

Query: 391 RTDDALSQHSSSNTN--RLSILQNKQTDIPSSMYGREVTVTVLTHKPIRNKVTGGEGRGD 218
           R+ D +S   S++T+    S+  + +  +P+S  G E++++     P R++  GGE   +
Sbjct: 652 RSQDNVSPKQSNDTSIPESSVGHDPKIVVPASECGTEISISSTLDSPDRSEADGGEIVLE 711

Query: 217 TAGSERRDVYVARERRFSDERHSALPDGGVPLLIRHMVHVDDVA 86
               E R+       + +   HS +   G  +     V  DD A
Sbjct: 712 IGSLEDRNHVGDNAEKDNSVLHSEVNTSGGAIEPEKEVQTDDTA 755


>01_07_0084 +
           40976976-40977164,40978174-40978201,40978445-40978575,
           40978941-40979434,40979516-40979609,40979686-40979779,
           40980342-40980444,40980550-40980601,40980716-40980756,
           40980881-40980960,40981490-40981936,40982378-40982554,
           40983205-40983803,40983886-40985040
          Length = 1227

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +2

Query: 50  MTMKREYGQQDLSHIINMYHVPDEQRYAAVGERTMPLI*ESPFACDIDIP 199
           M M+ +YG+ D S +I   H+ + Q+ + + +  +PL+  +P    I  P
Sbjct: 485 MFMQEKYGKVDTSKVIEKPHMMEIQKPSGLVDSNVPLVPRTPLTSIIKQP 534


>02_03_0383 +
           18385109-18385307,18385431-18385516,18385565-18385765,
           18385894-18386058,18386168-18386494
          Length = 325

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 23/89 (25%), Positives = 45/89 (50%)
 Frame = -1

Query: 379 ALSQHSSSNTNRLSILQNKQTDIPSSMYGREVTVTVLTHKPIRNKVTGGEGRGDTAGSER 200
           A S+ S  N ++ ++L+  +T    +  G EV VT+LTH  + +++T G+       + +
Sbjct: 154 ATSRMSFYNASKAAVLRFYET--LRAELGSEVGVTILTHGYVESEMTMGK-------AVQ 204

Query: 199 RDVYVARERRFSDERHSALPDGGVPLLIR 113
           +D  +  ++   D +    P GGV  + R
Sbjct: 205 KDGVLVVDQEARDVQIGVFPVGGVGAMCR 233


>12_02_0416 - 18891945-18892319,18892416-18892550,18892634-18893638
          Length = 504

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 210 PAVSPRPSPPVTLFRIGLCVRTVTVT 287
           P  SP P PPV+LFR    +   T++
Sbjct: 169 PPPSPPPPPPVSLFRFSYTLHIATIS 194


>01_05_0250 - 19907517-19908429,19910000-19910268
          Length = 393

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = -1

Query: 400 RRRRTDDALSQHSSSNTNRLSILQNKQTDIPSSMYGREVTVTVLT--HKPIRNKVTGGEG 227
           R+ +  D      S+   +   +QNK+ ++PSS+ G+  T+   +  +  ++NK     G
Sbjct: 291 RKNKVVDVTDHKDSAELLKTRSIQNKKAEMPSSVTGKAPTMPTKSAPNDSMKNKPV-AIG 349

Query: 226 RGDTAGSERR 197
               +GS R+
Sbjct: 350 SAQMSGSSRK 359


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,935,006
Number of Sequences: 37544
Number of extensions: 455451
Number of successful extensions: 1274
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1272
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)